New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3860663	46 (0.780)	3 (0.050)	3/244	NT	6.5%	coding (214/615 nt)	PP_3412	LuxR family transcriptional regulator
	?	NC_002947	= 3860694	42 (0.750)					coding (245/615 nt)	PP_3412	LuxR family transcriptional regulator

GGCAATGGCAGTGAAGTGGCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACA  >  NC_002947/3860546‑3860840                                                                                                                                                     |                                                                                                                                                    ggCAATGGCAGTGAAGTGGCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCgg                                                                                                                                                     >  4:317287/1‑149 (MQ=255)   cAATGGCAGTGAAGTGGCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGc                                                                                                                                                    <  6:83869‑M2/148‑2 (MQ=255)    aaTGGCAGTGAAGTGGCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGcca                                                                                                                                                  >  7:51041‑M2/1‑146 (MQ=255)      tGGCAGTGAAGTGGCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGccagg                                                                                                                                                <  2:360563‑M2/149‑6 (MQ=255)              aaGTGGCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGAt                                                                                                                                        >  3:322963/1‑149 (MQ=255)               aGTGGCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATc                                                                                                                                       <  8:35107/149‑1 (MQ=255)                gTGGCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCt                                                                                                                                      <  5:83869/149‑1 (MQ=255)                  ggCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGt                                                                                                                                    <  6:142173/149‑1 (MQ=255)                   gCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGt                                                                                                                                    <  1:115994/148‑1 (MQ=255)                    cTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTAt                                                                                                                                  <  6:82165/149‑1 (MQ=255)                       aGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTAtgt                                                                                                                                <  4:322963/148‑1 (MQ=255)                            gCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCCTCAAGCGATTGCAGAGCCTGGAGCCGGTAGCGAAGGTCATGGTGCTGCCCGGCCAGGCCACCGGTCGGTATGTgcggcg                                                                                                                          >  6:271788/1‑149 (MQ=255)                               cgcgAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGccaggc                                                                                                                                               <  4:49295‑M2/125‑7 (MQ=255)                               cgcgAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGccaggc                                                                                                                                               >  3:49295‑M2/1‑119 (MQ=255)                               cgcgAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTAtgtg                                                                                                                               <  4:334577/141‑1 (MQ=255)                               cgcgAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGcagatccg                                                                                                                       >  3:334577/1‑142 (MQ=255)                                gcgAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGc                                                                                                                     >  3:73613/1‑149 (MQ=255)                                        cgcCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGAt                                                                                                               <  3:275728/147‑1 (MQ=255)                                          cccGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCg                                                                                                           <  1:360563/149‑1 (MQ=255)                                           ccGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCgg                                                                                                          <  3:81621/149‑1 (MQ=255)                                              gtcGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAATGCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCGGGAt                                                                                                       <  4:73613/147‑1 (MQ=255)                                                                  cGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAg                                                                                    >  8:25678/1‑148 (MQ=255)                                                                      cTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGaa                                                                                 >  6:59720/1‑147 (MQ=255)                                                                      cTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAaga                                                                               <  1:97025/149‑1 (MQ=255)                                                                         cccGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGa                                                                            <  6:124088/149‑1 (MQ=255)                                                                           cGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCAc                                                                                                                                            <  6:12173/84‑1 (MQ=255)                                                                           cGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCAc                                                                                                                                            >  5:12173/1‑84 (MQ=255)                                                                           cGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGAcc                                                                          <  5:59720/149‑1 (MQ=255)                                                                            ggCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCa                                                                         >  7:355732/1‑149 (MQ=255)                                                                               cTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAgg                                                                                   >  8:62908/1‑136 (MQ=255)                                                                               cTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAgg                                                                                   <  7:62908/136‑1 (MQ=255)                                                                                tGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAg                                                                     >  2:82728/1‑149 (MQ=255)                                                                                     ggCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAGGCCct                                                                >  2:181205/1‑149 (MQ=255)                                                                                      gCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAGGCCctg                                                               <  1:181205/149‑1 (MQ=255)                                                                                        aTGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCAc                                                                        >  5:175705/1‑138 (MQ=255)                                                                                        aTGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCAc                                                                        <  6:175705/138‑1 (MQ=255)                                                                                          ggAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTAt                                                                                                                                  <  6:252960/79‑1 (MQ=255)                                                                                          ggAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTAt                                                                                                                                  >  5:252960/1‑79 (MQ=255)                                                                                            aaGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCGGGATa                                                                                                      >  2:194141/1‑104 (MQ=255)                                                                                            aaGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCGGGATa                                                                                                      <  1:194141/104‑1 (MQ=255)                                                                                                  tcaAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGaa                                                                                 <  2:192674/119‑1 (MQ=255)                                                                                                    aaGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCGGGATAGGTGCCTTCTTAACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGACCTc                                                   >  8:361564/1‑147 (MQ=255)                                                                                                         aTTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGccaggctctgcaatcgcttgatgacttccatgccgtccaggccgggcaggccgatgtcgagaatgactac                                                                               <  2:275475‑M2/115‑71 (MQ=255)                                                                                                         aTTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGccaggctctgcaatcgcttgatgacttccatgccgtccaggccgggcaggccgatgtcgagaatgactac                                                                               >  1:275475‑M2/1‑45 (MQ=255)                                                                                                          ttGCAGAGCCTGGAGCCGGTTCCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATTTGCGTCT‑CTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAGTCCCTGCTGTTCGCCCTCAAGGCCCt                                           <  5:384963/149‑1 (MQ=255)                                                                                                             cAGAGCCTGGAGCCGGTACCGAAGTTCATGGTTCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGa                                         <  7:361564/148‑1 (MQ=255)                                                                                                                   cTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAgg                                  <  1:100157/149‑1 (MQ=255)                                                                                                                    tGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGccaggctctgcaatcgcttgatgacttccatgccgtccaggccgggcaggccgatgtcgagaatgactacgtccgggcgcagttcgcgggctacctgagccacttcactgccatt                                  <  2:327728‑M2/149‑116 (MQ=255)                                                                                                                         ccGGTACGGAAGTTCATGGTGCGGACCGGACAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTc                            <  4:280319/149‑1 (MQ=255)                                                                                                                            gTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGAc                         <  3:183020/149‑1 (MQ=255)                                                                                                                                    gTTCATGGTGCTGACCGGCCAGGCCACTGATCTGTATGTGCGTCG‑CTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAAGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCg                  >  8:37771/1‑148 (MQ=255)                                                                                                                                            tGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCGAGTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGATGAGGCCCCCGCGGCCCTGCTGTTCGCCGTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGtg          >  1:258440/1‑148 (MQ=255)                                                                                                                                                gACCGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAATGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTc      >  2:301614/1‑148 (MQ=255)                                                                                                                                                 aCCGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAgg                                  >  6:128742/1‑119 (MQ=255)                                                                                                                                                 aCCGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAgg                                  <  5:128742/119‑1 (MQ=255)                                                                                                                                                  ccGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAAc   <  7:25678/149‑1 (MQ=255)                                                                                                                                                   cGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCaa    >  3:333909/1‑147 (MQ=255)                                                                                                                                                   cGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACa  <  8:355732/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GGCAATGGCAGTGAAGTGGCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCG‑CTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTTATTCGACCTTTCCGCAAATGTCGGTCAACA  >  NC_002947/3860546‑3860840

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.