| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3860663 | 46 (0.780) | 3 (0.050) | 3/244 | NT | 6.5% | coding (214/615 nt) | PP_3412 | LuxR family transcriptional regulator |
| ? | NC_002947 | = 3860694 | 42 (0.750) | coding (245/615 nt) | PP_3412 | LuxR family transcriptional regulator | |||||
GAGCGCTTCCATGTCATCGGCGAGGTCGGCAATGGCAGTGAAGTGGCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCGCTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTT > NC_002947/3860519‑3860810 | gagcgcTTCCATGTCATCGGCGAGGTCGGCAATGGCAGTGAAGTGGATCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGGGATTGCAGAGCCTGGAGcc > 6:384963/1‑149 (MQ=255) ccATGTCATCGGCGAGGTCGGCAATGGCAGTGAAGTGGCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCg < 6:18120/148‑1 (MQ=255) tGTCATCGGCGAGGTCGGCAATGGCAGTGAAGTGGCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGt > 4:183020/1‑149 (MQ=255) aTCGGCGAGGTCGGCAATGGCAGTGAAGTGGCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCAt > 5:82165/1‑149 (MQ=255) gCGAGGTCGGCAATGGCAGTGAAGTGGCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTg < 4:182326/149‑1 (MQ=255) gTCGGCAATGGCAGTGAAGTGGCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGACTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGAc > 4:275728/1‑149 (MQ=255) ggCAATGGCAGTGAAGTGGCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCgg > 4:317287/1‑149 (MQ=255) cAATGGCAGTGAAGTGGCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGc < 6:83869‑M2/148‑2 (MQ=255) aaTGGCAGTGAAGTGGCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGccggtcagcaccatgaacttcggtaccggctcca < 2:327728‑M1/149‑35 (MQ=255) aaTGGCAGTGAAGTGGCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGcca > 7:51041‑M2/1‑146 (MQ=255) tGGCAGTGAAGTGGCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGccagg < 2:360563‑M2/149‑6 (MQ=255) aaGTGGCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGAt > 3:322963/1‑149 (MQ=255) aGTGGCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATc < 8:35107/149‑1 (MQ=255) gTGGCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCt < 5:83869/149‑1 (MQ=255) ggCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGt < 6:142173/149‑1 (MQ=255) gCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGt < 1:115994/148‑1 (MQ=255) cTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTAt < 6:82165/149‑1 (MQ=255) aGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTAtgt < 4:322963/148‑1 (MQ=255) gCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCCTCAAGCGATTGCAGAGCCTGGAGCCGGTAGCGAAGGTCATGGTGCTGCCCGGCCAGGCCACCGGTCGGTATGTgcggcg > 6:271788/1‑149 (MQ=255) cgcgAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGccaggc < 4:49295‑M2/125‑7 (MQ=255) cgcgAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGccaggc > 3:49295‑M2/1‑119 (MQ=255) cgcgAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTAtgtg < 4:334577/141‑1 (MQ=255) cgcgAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGcagatccg > 3:334577/1‑142 (MQ=255) gcgAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCGCTGc > 3:73613/1‑149 (MQ=255) cgcCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCGCTGCCTGGAt < 3:275728/147‑1 (MQ=255) cccGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCGCTGCCTGGATGCCg < 1:360563/149‑1 (MQ=255) ccGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCGCTGCCTGGATGCCgg < 3:81621/149‑1 (MQ=255) gtcGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAATGCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCGCTGCCTGGATGCCGGGAt < 4:73613/147‑1 (MQ=255) gTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGccggtcagcaccatgaacttcggtaccggctccaggctctgcaat > 1:275475‑M1/1‑70 (MQ=255) gTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGccggtcagcaccatgaacttcggtaccggctccaggctctgcaat < 2:275475‑M1/115‑46 (MQ=255) cGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCGCTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAg > 8:25678/1‑148 (MQ=255) cTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCg < 6:145422/79‑1 (MQ=255) cTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCg > 5:145422/1‑79 (MQ=255) cTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCGCTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGaa > 6:59720/1‑147 (MQ=255) cTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCGCTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAaga < 1:97025/149‑1 (MQ=255) cccGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCGCTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGa < 6:124088/149‑1 (MQ=255) cGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCAc < 6:12173/84‑1 (MQ=255) cGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCAc > 5:12173/1‑84 (MQ=255) cGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCGCTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGAcc < 5:59720/149‑1 (MQ=255) ggCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCGCTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCa > 7:355732/1‑149 (MQ=255) cTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCGCTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAgg > 8:62908/1‑136 (MQ=255) cTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCGCTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAgg < 7:62908/136‑1 (MQ=255) tGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCGCTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAg > 2:82728/1‑149 (MQ=255) ggCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCGCTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAGGCCct > 2:181205/1‑149 (MQ=255) gCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCGCTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAGGCCctg < 1:181205/149‑1 (MQ=255) aTGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCGCTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCAc < 6:175705/138‑1 (MQ=255) aTGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCGCTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCAc > 5:175705/1‑138 (MQ=255) ggAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTAt < 6:252960/79‑1 (MQ=255) ggAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTAt > 5:252960/1‑79 (MQ=255) aaGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCGCTGCCTGGATGCCGGGATa > 2:194141/1‑104 (MQ=255) aaGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCGCTGCCTGGATGCCGGGATa < 1:194141/104‑1 (MQ=255) tcaAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCGCTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGaa < 2:192674/119‑1 (MQ=255) aaGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCGCTGCCTGGATGCCGGGATAGGTGCCTTCTTAACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGACCTc > 8:361564/1‑147 (MQ=255) aTTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGccaggctctgcaatcgcttgatgacttccatgccgtccaggccgggcaggccgatgtcgagaatgactac < 2:275475‑M2/115‑71 (MQ=255) aTTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGccaggctctgcaatcgcttgatgacttccatgccgtccaggccgggcaggccgatgtcgagaatgactac > 1:275475‑M2/1‑45 (MQ=255) ttGCAGAGCCTGGAGCCGGTTCCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATTTGCGTCTCTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAGTCCCTGCTGTTCGCCCTCAAGGCCCt < 5:384963/149‑1 (MQ=255) cAGAGCCTGGAGCCGGTACCGAAGTTCATGGTTCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCGCTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGa < 7:361564/148‑1 (MQ=255) gCCTGGccggtcagcaccatgaacttcggtaccggctccaggctctgcaatcgcttgatgacttccatgccgtccaggccgggcaggccgatgtcgagaatgactacgtccgggcgcagttcgcg < 4:49295‑M1/125‑120 (MQ=255) gCCTGGccggtcagcaccatgaacttcggtaccggctccaggctctgcaatcgcttgatgacttccatgccgtccaggccgggcaggccgatgtcgagaatgactacgtccgggcgcagttcgcg > 3:49295‑M1/1‑6 (MQ=255) ccTGGccggtcagcaccatgaacttcggtaccggctccaggctctgcaatcgcttgatgacttccatgccgtccaggccgggcaggccgatgtcgagaatgactacgtccgggcgcagttcgcgggctacctgagccacttcactgcca < 2:360563‑M1/149‑145 (MQ=255) cTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCGCTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAgg < 1:100157/149‑1 (MQ=255) tGGccggtcagcaccatgaacttcggtaccggctccaggctctgcaatcgcttgatgacttccatgccgtccaggccgggcaggccgatgtcgagaatgactacgtccgggcgcagttcgcgggctacctgagccacttcactgccatt > 7:51041‑M1/1‑3 (MQ=255) tGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGccaggctctgcaatcgcttgatgacttccatgccgtccaggccgggcaggccgatgtcgagaatgactacgtccgggcgcagttcgcgggctacctgagccacttcactgccatt < 2:327728‑M2/149‑116 (MQ=255) gccggtcagcaccatgaacttcggtaccggctccaggctctgcaatcgcttgatgacttccatgccgtccaggccgggcaggccgatgtcgagaatgactacgtccgggcgcagttcgcgggctacctgagccacttcactgccattg < 6:83869‑M1/148‑148 (MQ=255) | GAGCGCTTCCATGTCATCGGCGAGGTCGGCAATGGCAGTGAAGTGGCTCAGGTAGCCCGCGAACTGCGCCCGGACGTAGTCATTCTCGACATCGGCCTGCCCGGCCTGGACGGCATGGAAGTCATCAAGCGATTGCAGAGCCTGGAGCCGGTACCGAAGTTCATGGTGCTGACCGGCCAGGCCACCGATCTGTATGTGCGTCGCTGCCTGGATGCCGGGATAGGTGCCTTCGTCACCAAGGAAGAGGACCACGAGGCCCTGCTGTTCGCCCTCAAGGCCCTGACCAAAGGTT > NC_002947/3860519‑3860810 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |