New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3879643 =	42 (0.710)	3 (0.050)	3/244	NT	7.1%	coding (1478/3180 nt)	mexF	multidrug RND transporter MexF
	?	NC_002947	3879685 =	39 (0.690)					coding (1520/3180 nt)	mexF	multidrug RND transporter MexF

ACCCGGCGCACGCCACCGACGTAGCTGTGGCTGGCCCGGTCGAAGAACCGGTTGAAAGGGGAGAACAGCCAGCTGCCCAGCAGCTTGTCGAGGAACCGCGAGAAACGGTCCTTGGGTGCGTGATGATCCTTGAGCAGCACCGCGGCCAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3879793‑3879643 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaaggACCGTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTGGCGTGCGCCGGGTCATCCG‑CTCCAGCGGCATCGCCCTGTTCGTGTATGCCG  >  NC_002947/3879685‑3879831                                                                                                                                                                                                                                                                                                             ACCCGGCGCACGCCACCGACGTAGCTGTGGCTGGCCCGGTCGAAGAACCGGTTGAAAGGGGAGAACAGCCAGCTGCCCAGCAGCTTGTCGAGGAACCGCGAGAAACGGTCCTTGGGTGCGTGATGATCCTTGAGCAGCACCGCGGCC                                                                                                                                                          >  5:32005/1‑147                                                                                                               CTTGGGTGCGTGATGATCCTTGAGCAGCACCGCGGCCAAGGACCGTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTGGCGTGCGCCGGG                                          >  8:252401/1‑149                                                                                                                TTGGGTGCGTGATGATCCTTGAGCAGCACCGCGGCCAAGGACCGTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTGG                                                     >  5:328327/1‑137                                                                                                                TTGGGTGCGTGATGATCCTTGAGCAGCACCGCGGCCAAGGACCGTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTGG                                                     <  6:328327/137‑1                                                                                                                                                    AAGGACCGTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTGGCGTGCGCCGGGTCATCCG‑CTCCAGCGGCATCGCCCTGTTCGTGTATGC    >  1:196014/1‑149                                                                                                                                                    AAGGACCGTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTGGCGTGCGCCGGGTCATCCG‑CTCCAGCGGCATCGCCCTGTTCGTGTATGC    >  2:343285/1‑149                                                                                                                                                     AGGACCGTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTGGCGTGCGCCGGGTCATCCG‑CTCCAGCGGCATCGCCCTGTTCGTGTATGCC   >  2:45331/1‑149                                                                                                                                                       GACCGTTTCTCGCGGTTCCTCGACAAGCTTCTGGGCAGCTGGGTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCATGCACAGCTACGTCGGTGGCGTTCGCCGGGTCATCCGCCTCCAGCGGCATCGCCCTGTTCGTGTATGCCG  <  1:45331/149‑1                                                                                                                                                                                                                                                                                                             ACCCGGCGCACGCCACCGACGTAGCTGTGGCTGGCCCGGTCGAAGAACCGGTTGAAAGGGGAGAACAGCCAGCTGCCCAGCAGCTTGTCGAGGAACCGCGAGAAACGGTCCTTGGGTGCGTGATGATCCTTGAGCAGCACCGCGGCCAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3879793‑3879643 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaaggACCGTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTGGCGTGCGCCGGGTCATCCG‑CTCCAGCGGCATCGCCCTGTTCGTGTATGCCG  >  NC_002947/3879685‑3879831

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.