New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3879643 =	42 (0.710)	3 (0.050)	3/244	NT	7.1%	coding (1478/3180 nt)	mexF	multidrug RND transporter MexF
	?	NC_002947	3879685 =	39 (0.690)					coding (1520/3180 nt)	mexF	multidrug RND transporter MexF

ATCATCGCCACCGCCCTGGTGCTGTGCGCGGTGTTCGTACCTGCAGCGTTCATTTCCGGCCTTACCGGGCAGTTCTACAAGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTGGCGTGCG  >  NC_002947/3879495‑3879787                                                                                                                                                     |                                                                                                                                                  cggcatacacgaacagggcgatgccgctggaggcggatgacccggcgaacgccaccgacgtagctgtgcatggcccggtcgaagaaccggttgaaaggggagaacacccagctgcccagaagcttgtcgaggaaccgcgagaaacggtc                                                                                                                                                   <  1:45331‑M1/1‑1 (MQ=255)   ggcatacacgaacagggcgatgccgctggagcggatgacccggcgcacgccaccgacgtagctgtggctggcccggtcgaagaaccggttgaaaggggagaacagccagctgcccagcagcttgtcgaggaaccgcgagaaacggtCCt                                                                                                                                                 >  2:45331‑M1/147‑149 (MQ=255)    gcatacacgaacagggcgatgccgctggagcggatgacccggcgcacgccaccgacgtagctgtggctggcccggtcgaagaaccggttgaaaggggagaacagccagctgcccagcagcttgtcgaggaaccgcgagaaacggtCCtt                                                                                                                                                >  1:196014‑M1/146‑149 (MQ=255)    gcatacacgaacagggcgatgccgctggagcggatgacccggcgcacgccaccgacgtagctgtggctggcccggtcgaagaaccggttgaaaggggagaacagccagctgcccagcagcttgtcgaggaaccgcgagaaacggtCCtt                                                                                                                                                >  2:343285‑M1/146‑149 (MQ=255)           ccGCCCTGGTGCTGTGCGCGGTGTTCGTACCTGCAGCGTTCATTTCCGGCCTTACCGGGCAGTTCTACAAGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCcgcg                                                                                                                                         <  5:207313/149‑1 (MQ=255)            cGCCCTGGTGCTGTGCGCGGTGTTCGTACCTGCAGCGTTCATTTCCGGCCTTACCGGGCAGTTCTACAAGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCgg                                                                                                                                        >  6:310308/1‑149 (MQ=255)            cGCCCTGGTGCTGTGCGCGGTGTTCGTACCTGCAGCGTTCATTTCCGGCCTTACCGGGCAGTTCTACAAGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCgg                                                                                                                                        <  3:365813/149‑1 (MQ=255)                           cgcgGTGTTCGTACCTGCAGCGTTCATTTCCGGCCTTACCGGGCAGTTCTACAAGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGatc                                                                                                                         <  5:230892/149‑1 (MQ=255)                              ggTGTTCGTACCTGCAGCGTTCATTTCCGGCCTTACCGGGCAGTTCTACAAGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGatcatc                                                                                                                      <  4:347521/149‑1 (MQ=255)                               gtgtTCGTACCTGCAGCGTTCATTTCCGGCCTTACCGGGCAGTTCTACAAGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGAtcatca                                                                                                                     <  1:247082/149‑1 (MQ=255)                                     gTACCTGCAGCGTTCATTTCCGGCCTTACCGGGCAGTTCTACAAGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCAcc                                                                                                               >  5:290757/1‑149 (MQ=255)                                       aCCTGCAGCGTTCATTTCCGGCCTTACCGGGCAGTTCTACAAGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTgg                                                                                                                                              >  2:31567/1‑116 (MQ=255)                                       aCCTGCAGCGTTCATTTCCGGCCTTACCGGGCAGTTCTACAAGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGATCAACTCGCTGACCCTGTCGCCAGCCTTgg                                                                                                                                              <  1:31567/116‑1 (MQ=255)                                         cccggcgcacgccaccgacgtagctgtggctggcccggtcgaagaaccggttgaaaggggagaacagccagctgcccagcagcttgtcgaggaaccgcgagaaacggtCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAg                                                                                                           >  8:252401‑M1/109‑149 (MQ=255)                                           gCAGCGTTCATTTCCGGCCTTACCGGGCAGTTCTACAAGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGa                                                                                                         >  3:46471/1‑149 (MQ=255)                                            cAGCGTTCATTTCCGGCCTTACCGGGCAGTTCTACAAGCAGTTCGCCGTGACCATCGCCATCTCGAGCGTCATTTGGGCGTTCAAATCGCTGACACTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACACAAGGAc                                                                                                        >  5:304159/1‑149 (MQ=255)                                                 ttCATTTCCGGCCTTACCGGGCAGTTCTACAAGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGc                                                                                                                  <  8:344558/134‑1 (MQ=255)                                                  tCATTTCCGGCCTTACCGGGCAGTTCTACAAGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTtc                                                                                                 >  5:234771/1‑149 (MQ=255)                                                    ccaccgacgtagctgtggctggcccggtcgaagaaccggttgaaaggggagaacagccagctgcccagcagcttgtcgaggaaccgcgagaaacggtCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCaa                                                                                                            >  5:328327‑M1/98‑137 (MQ=255)                                                    ccaccgacgtagctgtggctggcccggtcgaagaaccggttgaaaggggagaacagccagctgcccagcagcttgtcgaggaaccgcgagaaacggtCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCaa                                                                                                            <  6:328327‑M1/40‑1 (MQ=255)                                                        ccGGCCTTACCGGGCAGTTCTACAAGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTcgcg                                                                                            <  8:247230/148‑1 (MQ=255)                                                                aCCGGGCAGTTCTACAAGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTc                                                                                     <  4:46471/147‑1 (MQ=255)                                                                    ggCAGTTCTACAAGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCgg                                                                                           <  2:161282/137‑1 (MQ=255)                                                                         ttCTACAAGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAgctgct                                                                          >  3:83165/1‑149 (MQ=255)                                                                              cAATCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGAGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACACGCTGCTGGGCa                                                                     <  7:289090/149‑1 (MQ=255)                                                                              cAAGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGc                                                                      <  4:83165/148‑1 (MQ=255)                                                                              cAAGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTGCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTggg                                                                       >  6:1090/1‑147 (MQ=255)                                                                               aaGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAg                                                                    >  4:242007/1‑149 (MQ=255)                                                                                 gCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAgct                                                                  >  8:276349/1‑149 (MQ=255)                                                                                        gCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCATCCTTGGCCGAGGTGCTGCTAAATGATCATCACGCACACAATGACC‑GTTTCTCGAGGTTCCTCGCCAACATTCGGTGCAgctgtaagtg                                                           >  6:264075/1‑143 (MQ=255)                                                                                        gCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTtctc                                                                                               >  7:180367/1‑113 (MQ=255)                                                                                        gCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTtctc                                                                                               <  8:180367/113‑1 (MQ=255)                                                                                        gCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCCCAGCAgcttgtcga                                                            <  6:290757/148‑7 (MQ=255)                                                                                              aCCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTccc                                                      <  7:276349/148‑1 (MQ=255)                                                                                                  tCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTcgcg                                                                                            <  4:294781/106‑1 (MQ=255)                                                                                                  tCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTcgcg                                                                                            >  3:294781/1‑106 (MQ=255)                                                                                                           cGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGttc                                        >  6:32005/1‑149 (MQ=255)                                                                                                                 tCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGAc                                  <  5:310308/149‑1 (MQ=255)                                                                                                                    tttCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTGCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCgg                               <  6:237018/149‑1 (MQ=255)                                                                                                                    tttCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCgg                               <  3:242007/149‑1 (MQ=255)                                                                                                                             tCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGgccagc                         <  7:244654/146‑1 (MQ=255)                                                                                                                             tCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGgccagc                         >  8:244654/1‑146 (MQ=255)                                                                                                                                aCTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAg                    >  3:26516/1‑148 (MQ=255)                                                                                                                                aCTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGc                   >  1:340418/1‑149 (MQ=255)                                                                                                                                aCTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGCTTCTTCGACCGGGCCAGCCACAg                    >  8:151290/1‑148 (MQ=255)                                                                                                                                  tCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTa                 >  3:93345/1‑149 (MQ=255)                                                                                                                                     cTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGt              <  4:93345/149‑1 (MQ=255)                                                                                                                                         cccGGTCGCCAGCCTTGGCCGCGGTTCTGCTCAAGTCTCATCACGCACCCACTGACC‑GTTTCTCGCGGTTACTCGACAAGCTGATGGTCAGCTGGCTGTTCTCCCCTTTCAACCGTTTCTTCGACCGGGCCAGCCACAGCTACGTCGGt          <  5:264075/149‑1 (MQ=255)                                                                                                                                           cTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACCGGTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTg         >  1:103782/1‑149 (MQ=255)                                                                                                                                                 ccAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTGGCGTgcg  >  8:266422/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                  ATCATCGCCACCGCCCTGGTGCTGTGCGCGGTGTTCGTACCTGCAGCGTTCATTTCCGGCCTTACCGGGCAGTTCTACAAGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTGGCGTGCG  >  NC_002947/3879495‑3879787

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.