New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3879643 =	42 (0.710)	3 (0.050)	3/244	NT	7.1%	coding (1478/3180 nt)	mexF	multidrug RND transporter MexF
	?	NC_002947	3879685 =	39 (0.690)					coding (1520/3180 nt)	mexF	multidrug RND transporter MexF

GCAGCGTTCATTTCCGGCCTTACCGGGCAGTTCTACAAGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTGGCGTGCGCCGGGTCATCCG‑CTCCAGCGGCATCGCCCTGTTCGTGTATGCCG  >  NC_002947/3879537‑3879831                                                                                                                                                     |                                                                                                                                                     gCAGCGTTCATTTCCGGCCTTACCGGGCAGTTCTACAAGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGa                                                                                                                                                      >  3:46471/1‑149 (MQ=255)  cAGCGTTCATTTCCGGCCTTACCGGGCAGTTCTACAAGCAGTTCGCCGTGACCATCGCCATCTCGAGCGTCATTTGGGCGTTCAAATCGCTGACACTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACACAAGGAc                                                                                                                                                     >  5:304159/1‑149 (MQ=255)        tCATTTCCGGCCTTACCGGGCAGTTCTACAAGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTtc                                                                                                                                              >  5:234771/1‑149 (MQ=255)              ccGGCCTTACCGGGCAGTTCTACAAGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTcgcg                                                                                                                                         <  8:247230/148‑1 (MQ=255)                      aCCGGGCAGTTCTACAAGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTc                                                                                                                                  <  4:46471/147‑1 (MQ=255)                          ggCAGTTCTACAAGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCgg                                                                                                                                        <  2:161282/137‑1 (MQ=255)                               ttCTACAAGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAgctgct                                                                                                                       >  3:83165/1‑149 (MQ=255)                                    cAATCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGAGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACACGCTGCTGGGCa                                                                                                                  <  7:289090/149‑1 (MQ=255)                                    cAAGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGc                                                                                                                   <  4:83165/148‑1 (MQ=255)                                    cAAGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTGCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTggg                                                                                                                    >  6:1090/1‑147 (MQ=255)                                     aaGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAg                                                                                                                 >  4:242007/1‑149 (MQ=255)                                       gCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAgct                                                                                                               >  8:276349/1‑149 (MQ=255)                                              gCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCATCCTTGGCCGAGGTGCTGCTAAATGATCATCACGCACACAATGACC‑GTTTCTCGAGGTTCCTCGCCAACATTCGGTGCAgctgtaagtg                                                                                                        >  6:264075/1‑143 (MQ=255)                                              gCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTtctc                                                                                                                                            <  8:180367/113‑1 (MQ=255)                                              gCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTtctc                                                                                                                                            >  7:180367/1‑113 (MQ=255)                                              gCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCCCAGCAgcttgtcga                                                                                                         <  6:290757/148‑7 (MQ=255)                                                    aCCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTccc                                                                                                   <  7:276349/148‑1 (MQ=255)                                                        tCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTcgcg                                                                                                                                         >  3:294781/1‑106 (MQ=255)                                                        tCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTcgcg                                                                                                                                         <  4:294781/106‑1 (MQ=255)                                                                 cGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGttc                                                                                     >  6:32005/1‑149 (MQ=255)                                                                       tCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGAc                                                                               <  5:310308/149‑1 (MQ=255)                                                                          tttCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTGCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCgg                                                                            <  6:237018/149‑1 (MQ=255)                                                                          tttCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCgg                                                                            <  3:242007/149‑1 (MQ=255)                                                                                   tCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGgccagc                                                                      <  7:244654/146‑1 (MQ=255)                                                                                   tCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGgccagc                                                                      >  8:244654/1‑146 (MQ=255)                                                                                      aCTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAg                                                                 >  3:26516/1‑148 (MQ=255)                                                                                      aCTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGc                                                                >  1:340418/1‑149 (MQ=255)                                                                                      aCTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGCTTCTTCGACCGGGCCAGCCACAg                                                                 >  8:151290/1‑148 (MQ=255)                                                                                        tCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTa                                                              >  3:93345/1‑149 (MQ=255)                                                                                           cTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGt                                                           <  4:93345/149‑1 (MQ=255)                                                                                               cccGGTCGCCAGCCTTGGCCGCGGTTCTGCTCAAGTCTCATCACGCACCCACTGACC‑GTTTCTCGCGGTTACTCGACAAGCTGATGGTCAGCTGGCTGTTCTCCCCTTTCAACCGTTTCTTCGACCGGGCCAGCCACAGCTACGTCGGt                                                       <  5:264075/149‑1 (MQ=255)                                                                                                 cTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACCGGTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTg                                                      >  1:103782/1‑149 (MQ=255)                                                                                                       ccAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTGGCGTgcg                                               >  8:266422/1‑149 (MQ=255)                                                                                                            cttgggtgcgtgatgatccttgagcagcaccgcggccaaggACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTGGCGTGCGCCggg                                          >  8:252401‑M2/42‑149 (MQ=255)                                                                                                             ttgggtgcgtgatgatccttgagcagcaccgcggccaaggACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTgg                                                     >  5:328327‑M2/41‑137 (MQ=255)                                                                                                             ttgggtgcgtgatgatccttgagcagcaccgcggccaaggACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTgg                                                     <  6:328327‑M2/97‑1 (MQ=255)                                                                                                               GGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTGGCGTGCGCCGGGt                                         >  5:32005‑M1/1‑147 (MQ=255)                                                                                                                           gctCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTGGCGTGCGCCgg                                           <  4:219714/133‑1 (MQ=255)                                                                                                                              cAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTgg                                                     <  2:336757/120‑1 (MQ=255)                                                                                                                              cAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTgg                                                     >  1:336757/1‑120 (MQ=255)                                                                                                                               aaGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTGGCGTGCGCCGGGTCATCCG‑CTCCAGCGGCAt                      >  3:123472/1‑149 (MQ=255)                                                                                                                                  gATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTGGCGTGCGCCGGGTCATCCG‑CTCCAGCGGCATCGc                   >  1:171645/1‑149 (MQ=255)                                                                                                                                   atcatcACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTGGCGTGCGCCGGGTCATCCG‑CTCCAGCGGCATCGcc                  <  7:266422/149‑1 (MQ=255)                                                                                                                                     catcaCGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTGGCGTGCGCCGGGTCATCCG‑CTCCAGCGGCATCGCCCt                >  6:214924/1‑149 (MQ=255)                                                                                                                                         aCGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTTGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTGGCGTGCGCCGGGTCCTCCG‑CTCCAGCGGCATCGCCCTGttg            >  5:264068/1‑148 (MQ=255)                                                                                                                                           gCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTGGCGTGCGCCGGGTCATCCG‑CTCCAGCGGCATCGCCCTGTTCgt          <  4:26516/149‑1 (MQ=255)                                                                                                                                              cccAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGTCCAGCCACAGCTACGTCGGTGGCGTGCGCCGGGTCATCCG‑CTCCAGCGGCATCGCCCTGTTCGTGTa       <  5:1090/149‑1 (MQ=255)                                                                                                                                                 aaggACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTGGCGTGCGCCGGGTCATCCG‑CTCCAGCGGCATCGCCCTGTTCGTGTATGc    >  1:196014‑M2/5‑149 (MQ=255)                                                                                                                                                 aaggACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTGGCGTGCGCCGGGTCATCCG‑CTCCAGCGGCATCGCCCTGTTCGTGTATGc    >  2:343285‑M2/5‑149 (MQ=255)                                                                                                                                                  aggACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTGGCGTGCGCCGGGTCATCCG‑CTCCAGCGGCATCGCCCTGTTCGTGTATGcc   >  2:45331‑M2/4‑149 (MQ=255)                                                                                                                                                    gACC‑GTTTCTCGCGGTTCCTCGACAAGCTTCTGGGCAGCTGGGTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCATGCACAGCTACGTCGGTGGCGTTCGCCGGGTCATCCGCCTCCAGCGGCATCGCCCTGTTCGTGTATGCCg  <  1:45331‑M2/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GCAGCGTTCATTTCCGGCCTTACCGGGCAGTTCTACAAGCAGTTCGCCCTGACCATCGCCATCTCGACCGTCATTTCGGCGTTCAACTCGCTGACCCTGTCGCCAGCCTTGGCCGCGGTGCTGCTCAAGGATCATCACGCACCCAAGGACC‑GTTTCTCGCGGTTCCTCGACAAGCTGCTGGGCAGCTGGCTGTTCTCCCCTTTCAACCGGTTCTTCGACCGGGCCAGCCACAGCTACGTCGGTGGCGTGCGCCGGGTCATCCG‑CTCCAGCGGCATCGCCCTGTTCGTGTATGCCG  >  NC_002947/3879537‑3879831

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.