| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3905311 | 56 (0.950) | 3 (0.060) | 3/236 | NT | 5.6% | coding (13/432 nt) | PP_3447 | membrane protein |
| ? | NC_002947 | = 3905366 | 49 (0.900) | intergenic (‑43/‑150) | PP_3447/nfrB | membrane protein/bacteriophage N4 receptor inner membrane subunit | |||||
GTAACCCATGTTCCAGCTCATCGCGATGCCTGACATCAGCACCGACAGCACGGTCGACTGCGCCATGCCGGCGCCGAACGCCAGCTCCAGTGCGGGCGCCACACAGGCGACGGCGATGGCCTCATAGAGAATGGCCTGGACGATCTTGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3905159‑3905311‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttgcgggcTGCATCTTGTAGCTTTACAGGTCGTTCATTCAGGGAGCTGAACATGCAAGGTAAGGCCCGCAAGATCGTCCAGGCCATTCTCTATGAGGCCATCGCCGTCGCCTGTGTGGCGCCCGCACTGGAGCTGGCGTTCGGCGCCG < NC_002947/3905366‑3905227 GTAACCCATGTTCCAGCTCATCGCGATGCCTGACATCAGCACCGACAGCACGGTCGACTGCGCCATGCCGGCGCCGAACGCCAGCTCCAGTGCGGGCGCCACACAGGCGACGGCGATGGCCTCATAGAGAATGGCCTGGACGATCTTGC > 3:350415/1‑149GTAACCCATGTTCCAGCTCATCGCGATGCCTGACATCAGCACCGACAGCACGGTCGACTGCGCCATGCCGGCGCCGAACGCCAGCTCCAGTGCGGGCGCCACACAGGCGACGGCGATGGCCTCATAGAGAATGGCCTGGACGATCTTGC > 8:45362/1‑149 TAACCCATGTTCCAGCTCATCGCGATGCCTGACATCAGCACCGACAGCACGGTCGACTGCGCCATGCCGGCGCCGAACGCCAGCTCCAGTGCGGGCGCCACACAGGCGACGGCGATGGCCTCATAGAGAATGGCCTGGACGATCTTGC < 7:45362/148‑1 CACGGTCGACTGCGCCATGCCGGCGCCGAACGCCAGCTCCAGTGCGGGCGCCACACAGGCGACGGCGATGGCCTCATAGAGAATGGCCTGGACGATCTTGCGGGCTGCATCTTGTAGCTTTACAGGTCGTTCATTCAGGGAGCTGAACA > 2:221917/1‑149 CCGGCGCCGAACGCCAGCTCCAGTGCGGGCGCCACACAGGCGACGGCGATGGCCTCATAGAGAATGGCCTGGACGATCTTGCGGGCTGCATCTTGTAGCTTTACAGGTCGTTCATTCAGGTAGCTGAACATGCAAGGTAAGGCCCGCAA < 1:140418/149‑1 CCGGCGCCGAACGCCAGCTCCAGTGCGGGCGCCACACAGGCGACGGCGATGGCCTCATAGAGAATGGCCTGGACGATCTTGCGGGCTGCATCTTGTAGCTTTACAGGTCGTTCATTCAGGGAGCTGAACATGCAAGGTAAGGCCCGCA < 1:221917/148‑1 TCTTGCGGGCTGCATCTTGTAGCTTTACAGGTCGTTCATTCAGGGAGCTGAACATGCAAGGTAAGGCCCGCAAGATCGTCCAGGCCATTCTCTATGAGGCCATCGCCGTCGCCTGTGTGGCGCCCGCACTGGAGCTGGCGTTCGGCGC < 4:141012/148‑1 CTTGCGGGCTGCATCTTGTAGCTTTACAGGTCGTTCATTCAGGGAGCTGAACATGCAAGGTAAGGCCCGCAAGATCGTCCAGGCCATTCTCTATGAGGCCATCGCCGTCGCCTGTGTGGCGCCCGCACTGGAGCTGGCGTTCGGCGCCG > 7:288715/1‑149 GTAACCCATGTTCCAGCTCATCGCGATGCCTGACATCAGCACCGACAGCACGGTCGACTGCGCCATGCCGGCGCCGAACGCCAGCTCCAGTGCGGGCGCCACACAGGCGACGGCGATGGCCTCATAGAGAATGGCCTGGACGATCTTGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3905159‑3905311‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttgcgggcTGCATCTTGTAGCTTTACAGGTCGTTCATTCAGGGAGCTGAACATGCAAGGTAAGGCCCGCAAGATCGTCCAGGCCATTCTCTATGAGGCCATCGCCGTCGCCTGTGTGGCGCCCGCACTGGAGCTGGCGTTCGGCGCCG < NC_002947/3905366‑3905227 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |