New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3905311	56 (0.950)	3 (0.060)	3/236	NT	5.6%	coding (13/432 nt)	PP_3447	membrane protein
	?	NC_002947	= 3905366	49 (0.900)					intergenic (‑43/‑150)	PP_3447/nfrB	membrane protein/bacteriophage N4 receptor inner membrane subunit

CGGCGCCGAACGCCAGCTCCAGTGCGGGCGCCACACAGGCGACGGCGATGGCCTCATAGAGAATGGCCTGGACGATCTTGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTACATGACAGTGACATCTCCTGCACCTTCGTCGAGGGAACGAGCGAGGATAAGACGATGGCCCACTCTGCCCTGCCGGTGGCTGA  >  NC_002947/3905227‑3905512                                                                                                                                             |                                                                                                                                                   cGGCGCCGAACGCCAGCTCCAGTGCGGGCGCCACACAGGCGACGGCGATGGCCTCATAGAGAATGGCCTGGACGATCTTGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAgcccgcaag                                                                                                                                           >  7:288715‑M2/1‑140 (MQ=255)   gcgcCGAACGCCAGCTCCAGTGCGGGCGCCACACAGGCGACGGCGATGGCCTCATAGAGAATGGCCTGGACGATCTTGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAgcccgcaaga                                                                                                                                          <  4:141012‑M2/148‑11 (MQ=255)       cGAACGCCAGCTCCAGTGCGGGCGCCACACAGGCGACGGCGATGGCCTCATAGAGAATGGCCTGGACGATCTTGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAg                                                                                                                                     <  4:141406/149‑1 (MQ=255)              cAGCTCCAGTGCGGGCGCCACACAGGCGACGGCGATGGCCTCATAGAGAATGGCCTGGACGATCTTGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGaaa                                                                                                                              >  2:288142/1‑149 (MQ=255)               aGCTCCAGTGCGGGCGCCACACAGGCGACGGCGATGGCCTCATAGAGAATGGCCTGGACGATCTTGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATGCAACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGaaa                                                                                                                              <  1:88394/149‑1 (MQ=255)                  tCCAGTGCGGGCGCCACACAGGCGACGGCGATGGCCTCATAGAGAATGGCCTGGACGATCTTGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTg                                                                                                                          >  5:159120/1‑149 (MQ=255)                  tCCAGTGCGGGCGCCACACAGGCGACGGCGATGGCCTCATAGAGAATGGCCTGGACGATCTTGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACAACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTg                                                                                                                          >  8:38779/1‑149 (MQ=255)                         cGGGCGCCACACAGGCGACGGCGATGGCCTCATAGAGAATGGCCTGGACGATCTTGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAAt                                                                                                                    <  7:294590/148‑1 (MQ=255)                                 acacaGGCGACGGCGATGGCCTCATAGAGAATGGCCTGGACGATCTTGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTc                                                                                                           >  8:304418/1‑149 (MQ=255)                                 acacaGGCCACCGCGATGGCCTCATAGAGAATGGACTGGACGATCTTGCGGGCCTTACCATGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCAGCAAGAACCAGCCCGAAAATTGGACAATCCCGCGTTc                                                                                                           >  8:97384/1‑149 (MQ=255)                                           cGGCGATGGCCTCATAGAGAATGGTCTGGACGATGTTGCGGGCCTTACCTTTCATGTTCAGCTCCCTGAATG‑ATCGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGt                                                                                                 <  7:311931/149‑1 (MQ=255)                                             gCGATGGCCTCATAGAGAATGGCCTGGACGATCTTGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTa                                                                                                >  2:73416/1‑148 (MQ=255)                                                   gCCTCATAGAGAATGGCCTGGACGATCTTGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTAtt                                                                                          <  5:117465/148‑1 (MQ=255)                                                     cTCATAGAGAATGGCCTGGACGATCTTGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCg                                                                                       <  7:304418/149‑1 (MQ=255)                                                     cTCATAGAGAATGGCCAGGACGATCTTGCGGGCATTACCTTGCATGGTCAGCTCCATGAATG‑AACGACCTGTAAAGCTACAACATGCAGCCCGCAACAAACATCCCGAAATTTGGACTATCCCGCGTTCGGCTGCTGGTATCTATTcag                                                                                       >  6:177478/1‑147 (MQ=255)                                                        aTAGAGAATGGCCTGGACGATCTTGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGt                                                                                      <  1:73416/147‑1 (MQ=255)                                                        aTAGAGAATGGCCTGGACGATCTTGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACAACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTa                                                                                     <  7:38779/148‑1 (MQ=255)                                                         tAGAGAATGGCCTGGACGATCTTGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTACa                                                                                   <  3:141012/149‑1 (MQ=255)                                                         tAGAGAATGGCCTGGACGATCTTGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTACa                                                                                   >  8:147879/1‑149 (MQ=255)                                                         tAGAGAATGGCCTGGACGATCTTGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTACa                                                                                   >  5:140492/1‑149 (MQ=255)                                                         tAGAGAATGGCCTGGACGATCTTGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTACa                                                                                   >  8:92618/1‑149 (MQ=255)                                                           gagaATGGCCTGGACGATCTTGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTACAt                                                                                  <  7:147879/148‑1 (MQ=255)                                                            agaATGGCCTGGACGATCTTGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTACATGa                                                                                >  3:134268/1‑149 (MQ=255)                                                                   ccTGGACGATCTTGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTACATGACAGTGAc                                                                         <  1:288142/149‑1 (MQ=255)                                                                    cTGGACGATCTTGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATc                                                                                                                   <  6:278431/106‑1 (MQ=255)                                                                    cTGGACGATCTTGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATc                                                                                                                   >  5:278431/1‑106 (MQ=255)                                                                      ggACGATCTTGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCTAGAAACAGCCCGAAATATGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTACATGACAGTGACAtc                                                                      >  1:121554/1‑149 (MQ=255)                                                                       gACGATCTTGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCcgcg                                                                                                              <  7:154264/108‑1 (MQ=255)                                                                       gACGATCTTGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCcgcg                                                                                                              >  8:154264/1‑108 (MQ=255)                                                                        aCGATCTTGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCCTa                                                                                     <  3:90138/132‑1 (MQ=255)                                                                        aCGATCTTGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCATa                                                                                     >  4:90138/1‑132 (MQ=255)                                                                            tCTTGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTACATGACAGTGACATCTACTg                                                                 >  4:67229/1‑148 (MQ=255)                                                                              ttGCGGGCCTTACCTTGCATGTTCAGCTACCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAgcccgcaagatcgtccaggccattctctatgaggccatcgccgtcgcctgtgtggcgcccgcactggagctggcgttcggcgccgg                                                              <  1:140418‑M2/149‑87 (MQ=255)                                                                               tGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAgcccgcaagatcgtccaggccattctctatgaggccatcgccgtcgcctgtgtggcgcccgcactggagctggcgttcggcgccgg                                                              <  1:221917‑M2/148‑87 (MQ=255)                                                                                gCGGGCCTTACCTTTCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGGCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTACATGACAGTGACATCTCCt                                                                  <  7:97384/143‑1 (MQ=255)                                                                                gCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTa                                                                                     >  4:95214/1‑124 (MQ=255)                                                                                gCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTa                                                                                     <  3:95214/124‑1 (MQ=255)                                                                                      cTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTCGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTACATGACAGTGACATCTCCTGCACCTtcgtc                                                       >  5:192932/1‑148 (MQ=255)                                                                                                 tGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAgcccgcaagatcgtccaggccattctctatgaggccatcgccgtcgcctgtgtggcgcccgcactggagctggcgttcggcgccggcatggcgcagtcgaccgtg                                           >  2:221917‑M2/1‑44 (MQ=255)                                                                                                 tGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTACATGACAGTGACATCTCCTGc                                                                >  1:32978/1‑128 (MQ=255)                                                                                                 tGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTACATGACAGTGACATCTCCTGc                                                                <  2:32978/128‑1 (MQ=255)                                                                                                   ttCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTACATGACAGTGACATCTCCTGCACCTTCGTCGa                                                     <  4:83497/137‑1 (MQ=255)                                                                                                   ttCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTACATGACAGTGACATCTCCTGCACCTTCGTCGa                                                     >  3:83497/1‑137 (MQ=255)                                                                                                   ttCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTACATGACAGTGACATCTCCTGCACCTTCGTCGAGGGAAcgagcga                                         <  6:159120/149‑1 (MQ=255)                                                                                                        cTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTACATGACAGTGACATCTCCTGCACCTTCGTCGAGGGAACGAGCGAGGAt                                     >  3:125646/1‑148 (MQ=255)                                                                                                           ccTGAATT‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTACATGACAGTGACATCTCCTGCACCTTCGTCGAGGGAACGAGCGAGGATAAGa                                 <  7:92618/149‑1 (MQ=255)                                                                                                           ccTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTACATGACAGTGACATCTCCTGCACCTTCGTCGAGGGAACGAGCGAGGATAAGa                                 <  4:125646/149‑1 (MQ=255)                                                                                                           ccTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTACATGACAGTGACATCTCCTGCACCTTCGTCGAGGGAACGAGCGAGGATAAGa                                 <  4:134268/149‑1 (MQ=255)                                                                                                             tgaatg‑aaCGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTACATGACAGTGACATCTCCTGCACCTTCGTCGAGGGaa                                                <  3:32843/132‑1 (MQ=255)                                                                                                             tgaatg‑aaCGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTACATGACAGTGACATCTCCTGCACCTTCGTCGAGGGaa                                                >  4:32843/1‑132 (MQ=255)                                                                                                                 atcaaCGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTACATGACAGTGACATCTCCTGCACCTTCGTCGAGGGAACGAGCGAGGATAAGACGATg                            <  8:346667/146‑1 (MQ=255)                                                                                                                             tAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTACATGACAGTGACATCTCCTGCACCTTCGTCGAGGGAACGAGCGAGGATAAGACGATGGCCCACTctgc                 <  3:67229/148‑1 (MQ=255)                                                                                                                               aaGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTACATGACAGTGACATCTCCTGCACCTTCGTCGAGGGAAcgagcgag                                        >  6:39498/1‑123 (MQ=255)                                                                                                                               aaGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTACATGACAGTGACATCTCCTGCACCTTCGTCGAGGGAAcgagcgag                                        <  5:39498/123‑1 (MQ=255)                                                                                                                                 gCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTACATGACAGTGACATCTCCTGCACCTTCGTCGAGGGAACGAGCGAGGATAAGACGATGGCCCACTctgccctgc            >  1:6826/1‑149 (MQ=255)                                                                                                                                         aTGCAGCCCGCAAGAAACAGCCCGAAATTTCGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTACATGACAGTGACATCTCCTGCACCTTCGTCGAGGGAACGAGCGAGGATAAGACGATGGCCCACTCTGCCCTGCCGGTGGCt    <  2:121554/149‑1 (MQ=255)                                                                                                                                            cAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTACATGACAGTGACATCTCCTGCACCTTCGTCGAGGGAACGAGCGAGGATAAGACGATGGCCCACTCTGCCCTGCCGGTGGCTGa  <  6:140492/148‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                   CGGCGCCGAACGCCAGCTCCAGTGCGGGCGCCACACAGGCGACGGCGATGGCCTCATAGAGAATGGCCTGGACGATCTTGCGGGCCTTACCTTGCATGTTCAGCTCCCTGAATG‑AACGACCTGTAAAGCTACAAGATGCAGCCCGCAAGAAACAGCCCGAAATTTGGACAATCCCGCGTTCGGCTGCTTGTATCTATTCCGTACATGACAGTGACATCTCCTGCACCTTCGTCGAGGGAACGAGCGAGGATAAGACGATGGCCCACTCTGCCCTGCCGGTGGCTGA  >  NC_002947/3905227‑3905512

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.