New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3948573	69 (1.170)	4 (0.070)	4/242	NT	5.6%	coding (67/531 nt)	PP_3484	two‑component system response regulator
	?	NC_002947	= 3948596	69 (1.240)					coding (44/531 nt)	PP_3484	two‑component system response regulator

TTGCCTGTTCTTGCGTACAGCCTCCAGAACCTGAAAACCTTCCATGTCGGGCAGGCGGTAATCCAGCACAACTACTTGCGGTGCCAGGCTTTCAGCCTGTTCGATACCACTGGCACCGTCGTGGGCAACATGAACTTCCAGGCCTTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3948424‑3948573 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttgcgcAAAACCTGCAAGCGTATCTGCAGGCGCAAGGCCTGGAAGTTCATGTTGCCCACGACGGTGCCAGTGGTATCGAACAGGCTGAAAGCCTGGCACCGCAAGTAGTTGTGCTGGATTACCGCCTGCCCGACATGGAAGGTTTTCAGGTTCT  <  NC_002947/3948596‑3948449                                                                                                                                                                                                                                                                                                            TTGCCTGTTCTTGCGTACAGCCTCCAGAACCTGAAAACCTTCCATGTCGGGCAGGCGGTAATCCAGCACAACTACTTGCGGTGCCAGGCTTTCAGCCTGTTCGATACCACTGGCACCGTCGTGGGCAACATGAACTTCCAGGCCTTGCG                                                                                                                                                       >  4:148045/1‑149                            AACCTGAAAACCTTCCATGTCGGGCAGGCGGTAATCCAGCACAACTACTTGCGGTGCCAGGCTTTCAGCCTGTTCGATACCACTGGCACCGTCGTGGGCAACATGAACTTCCAGGCCTTGCGCAAAACCTGCAAGCGTATCTGCAGGCG                                                                                                                            >  1:77634/1‑149                                    AACCTTCCATGTCGGGCAGGCGGTAATCCAGCACAACTACTTGCGGTGCCAGGCTTTCAGCCTGTTCGATACCACTGGCACCGTCGTGGGCAACATGAACTTCCAGGCCTTGCGCAAAACCTGCAAGCGTATCTGCAGGCGCAAGGCCT                                                                                                                    <  2:77634/149‑1                                                            AATCCAGCACAACTACTTGCGGTGCCAGGCTTTCAGCCTGTTCGATACCACTGGCACCGTCGTGGGCAACATGAACTTCCAGGCCTTGCGCAAAACCTGCAAGCGTATCTGCAGGC                                                                                                                             <  5:300882/116‑1                                                            AATCCAGCACAACTACTTGCGGTGCCAGGCTTTCAGCCTGTTCGATACCACTGGCACCGTCGTGGGCAACATGAACTTCCAGGCCTTGCGCAAAACCTGCAAGCGTATCTGCAGGC                                                                                                                             >  6:300882/1‑116                                                                                                                                                 TTGCGCAAAACCTGCAAGCGTATCTGCAGGCGCAAGGCCTGGAAGTTCATGTTGCCCACGACGGTGCCAGTGGTATCGAACAGGCTGAAAGCCTGGCACCGCAAGTAGTTGTGCTGGATTACCGCCTGCCCGACATGGAAGGTTTTCAG       >  7:100599/1‑149                                                                                                                                                    CGCAAAACCTGCAAGCGTATCTGCAGGCGCAAGGCCTGGAAGTTCATGTTGCCCACGACGGTGCCAGTGGTATCGAACAGGCTGAAAGCCTGGCACCGCAAGTAGTTGTGCTGGATTACCGGCTGCCCGACATGGAAGGTTTTCAGGTT    >  6:28122/1‑149                                                                                                                                                     GCAAAACCTGCAAGCGTATCTGCAGGCGCAAGGCCTGGAAGTTCATGTTGCCCACGACGGTGCCAGTGGTATCGAACAGGCTGAAAGCCTGGCACCGCAAGTAGTTGTGCTGGATTACCGCCTGCCCGACATGGATGGTTTTCAGGTTC   >  5:317592/1‑149                                                                                                                                                      CAAAACCTGCAAGCGTATCTGCAGGCGCAAGGCCTGGAAGTTCATGTTGCCCACGACGGTGCCAGTGGTATCGAACAGGCTGAAAGCCTGGCACCGCAAGTAGTTGTGCTGGATTACCGCCTGCCCGACATGGAAGGTTTTCAGGTTCT  <  5:28122/149‑1                                                                                                                                                                                                                                                                                                            TTGCCTGTTCTTGCGTACAGCCTCCAGAACCTGAAAACCTTCCATGTCGGGCAGGCGGTAATCCAGCACAACTACTTGCGGTGCCAGGCTTTCAGCCTGTTCGATACCACTGGCACCGTCGTGGGCAACATGAACTTCCAGGCCTTGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3948424‑3948573 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttgcgcAAAACCTGCAAGCGTATCTGCAGGCGCAAGGCCTGGAAGTTCATGTTGCCCACGACGGTGCCAGTGGTATCGAACAGGCTGAAAGCCTGGCACCGCAAGTAGTTGTGCTGGATTACCGCCTGCCCGACATGGAAGGTTTTCAGGTTCT  <  NC_002947/3948596‑3948449

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.