| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3984950 | 59 (1.000) | 3 (0.050) | 3/240 | NT | 5.1% | coding (234/855 nt) | PP_3513 | LysR family transcriptional regulator |
| ? | NC_002947 | = 3984991 | 56 (1.010) | coding (275/855 nt) | PP_3513 | LysR family transcriptional regulator | |||||
CTGCGCAAAAGCCAGTCCACTGTCAGCATCGCCATCGCCAATTTCGAGGCCGATATCGGCTGCCCGCTGTTTGACCGCAATGGCCGCCACCCCACGCTCAATGAGGCGGGCAGGCAGGTGCTGAGCCATGTCGAAGCAATTCTCGAGGCCAGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3984795‑3984950‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgccTCGACATTTTGCGCCAGTCGCACTGCCAGCGCATCGAGCTGGGCGCTGGCCTCGAGAATTGCTTCGACATGGCTCAGCACCTGCCTGCCCGCCTCATTGAGCGTGGGGTGGCGGCCATTGCGGTCAAACAGCGGGCAGCCGATATCGG < NC_002947/3984991‑3984844 CTGCGCAAAAGCCAGTCCACTGTCAGCATCGCCATCGCCAATTTCGAGGCCGATATCGGCTGCCCGCTGTTTGACCGCAATGGCCGCCACCCCACGCTCAATGAGGCGGGCAGGCAGGTGCTGAGCCATGACGAAGCAATTCTCGAGGC < 6:183666/149‑1 AAAAGCCAGTCCACTGTCAGCATCGCCATCGCCAATTTCGAGGCCGATATCGGCTGCCCGCTGTTTGACCGCAATGGCCGCCACCCCACGCTCAATGAGGCGGGCAGGCAGGTGCTGAGCCATGTCGAAGCAATTCTCGAGGCCAGCGC > 7:20518/1‑149 AAAGCCAGTCCACTGTCAGCATCGCCATCGCCAATTTCGAGGCCGATATCGGCTGCCCGCTGTTTGACCGCAATGGCCGCCACCCCACGCTCAATGAGGCGGGCAGGCAGGTGCTGAGCCATGTCGAAGCAATTCTCGAGGCCAGCGCa > 4:112094/1‑148 GGCTGCCCGCTGTTTGACCGCAATGGCCGCCACCCCACGCTCAATGAGGCGGGCAGGCAGGTGCTGAGCCATGTCGAAGCAATTCTCGAGGCCAGCGCCTCGACATTTTGCGCCAGTCGCACTGCCAGCGCATCGAGCTGGGCGCTGG < 1:277210/148‑1 CGCAATGGCCGCCACCCCACGCTCAATGAGGCGGGCAGGCAGGTGCTGAGCCATGTCGAAGCAATTCTCGAGGCCAGCGCCTCGACATTTTGCGCCAGTCGCACTGCCAGCGCATCGAGCTGGGCGCTGGC < 7:155375/131‑1 CGCAATGGCCGCCACCCCACGCTCAATGAGGCGGGCAGGCAGGTGCTGAGCCATGTCGAAGCAATTCTCGAGGCCAGCGCCTCGACATTTTGCGCCAGTCGCACTGCCAGCGCATCGAGCTGGGCGCTGGC > 8:155375/1‑131 CCAGCGCCTCGACATTTTGCGCCAGTCGCACTGCCAGCGCATCGAGCTGGGCGCTGGCCTCGAGAATTGCTTCGACATGGCTCAGCACCTGCCTGCCCGCCTCATTGAGCGTGGGGTGGCGGCCATTGCGGTCAAACAGCGGGCAGCC < 8:114031/148‑1 CCAGCGCCTCGACATTTTGCGCCAGGCGCACTGCCAGCGCATCGAGCTGGGCGCTGGCCTCGATAATTGCTTCGACATGGCTCAGCACCTGCCTGCCCGCCTCATTGAGCGTGGGGTGGCGGCCATTGCGGTCAAACAGCGGGCAGCCG < 6:71670/149‑1 CCTCGACATTTTGCGCCAGTCGCACTGCCAGCGCATCGAGCTGGGCGCTGGCCTCGAGAATTGCTTCGACATGGCTCAGCACCTGCCTGCCCGCCTCATTGAGCGTGGGGTGGCGGCCATTGCGGTCAAACAGCGGGCAGCCGATATCG > 2:235139/1‑149 CCTCGACAATTAGCGCCAGTCGCACTGCCAGCGCATCGAGCTGGGCGCTGGCCTCGAGAATTGCTTCGACATGGCTCAGCACCTGCCTGCCCGCCTCATTGAGCGTGGTGTGGCGGCCATTGCGGTCAAACAGCGTGCAGCCGATATCG < 8:170056/149‑1 CTCGACATTTTGCGCCAGTCGCACTGCCAGCGCATCGAGCTGGGCGCTGGCCTCGAGAATTGCTTCGACATGGCTCAGCACCTGCCTGCCCGCCTCATTGAGCGTGGGGTGGCGGCCATTGCGGTCAAACAGCGGGCAGCCGATATCGG > 6:429/1‑149 CTGCGCAAAAGCCAGTCCACTGTCAGCATCGCCATCGCCAATTTCGAGGCCGATATCGGCTGCCCGCTGTTTGACCGCAATGGCCGCCACCCCACGCTCAATGAGGCGGGCAGGCAGGTGCTGAGCCATGTCGAAGCAATTCTCGAGGCCAGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3984795‑3984950‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcgccTCGACATTTTGCGCCAGTCGCACTGCCAGCGCATCGAGCTGGGCGCTGGCCTCGAGAATTGCTTCGACATGGCTCAGCACCTGCCTGCCCGCCTCATTGAGCGTGGGGTGGCGGCCATTGCGGTCAAACAGCGGGCAGCCGATATCGG < NC_002947/3984991‑3984844 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |