New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4139858 =	65 (1.100)	3 (0.050)	3/248	NT	5.2%	coding (791/1041 nt)	PP_3644	monooxygenase subunit
	?	NC_002947	4139899 =	47 (0.820)					coding (832/1041 nt)	PP_3644	monooxygenase subunit

GCGAACTTCGACTCCGGGCTCGGCTCCAGGAAGCCATTCACCGGGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4139906‑4139858 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgAAGTTCGCCGAAGTGCCGGCGTTCCAGCTGGAGAACATCCGCAAGAACACCATGATCGGCACCCCGGAAGAAATCATCGCGCGCATCAAGTACTACCAGGAACTGGGCGTCGACGAGTTCAGCTTCTGGTGCGACAACAGCTTGCCC  >  NC_002947/4139899‑4140045                                                                                                                                                                                                      GCGAACTTCGACTCCGGGCTCGGCTCCAGGAAGCCATTCACCGGGGTCGAAGTTCGCCGAAGTGCCGGCGTTCCAGCTGGAGAACATCCGCAAGAACACCATGATCGGCACCCCGGAAGAAATCATCGCGCGCATCAAGTACTACCAG                                                  >  3:73451/1‑148      CTTCGACTCCGGGCTCGGCTCCAGGAAGCCATTCACCGGGGTCGAAGTTCGCCGAAGTGCCGGCGTTCCAGCTGGAGAACATCCTCAAGAACACAATGATCGGCACCCCGGAAGAAA                                                                            <  3:113806/117‑1      CTTCGACTCCGGGCTCGGCTCCAGGAAGCCATTCACCGGGGTCGAAGTTCGCCGAAGTGCCGGCGTTCCAGCTGGAGAACATCCGCAAGAACACAATGATCGGCACCCCGGAAGAAA                                                                            >  4:113806/1‑117                                              GTCGAAGTTCGCCGAAGTGCCGGCGTTCCAGCTGGAGAACATCCGCAAGAACACCATGATCGGCACCCCGGAAGAAATCATCGCGCGCATCAAGTACTACCAGGAACTGGGCGTCGACGAGTTCAGCTTCTGGTGCGACAACAGCTTGC    <  8:222856/149‑1                                                CGAAGTTCGCCGAAGTGCCGGCGTTCCAGCTGGAGAACATCCGCAAGAACACCATGATCGGCACCCCGGAAGAAATCATCGCGCGCATCAAGTACTACCAGGAACTGGGCGTCGACGAGTTCAGCTTCTGGTGCGACAACAGCTTGCCC  >  4:160859/1‑149                                                                                                                                                                                                      GCGAACTTCGACTCCGGGCTCGGCTCCAGGAAGCCATTCACCGGGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4139906‑4139858 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgAAGTTCGCCGAAGTGCCGGCGTTCCAGCTGGAGAACATCCGCAAGAACACCATGATCGGCACCCCGGAAGAAATCATCGCGCGCATCAAGTACTACCAGGAACTGGGCGTCGACGAGTTCAGCTTCTGGTGCGACAACAGCTTGCCC  >  NC_002947/4139899‑4140045

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.