New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4407467	75 (1.270)	4 (0.070)	4/244	NT	5.2%	coding (377/1299 nt)	PP_3889	putative Phage integrase
	?	NC_002947	= 4407483	74 (1.310)					coding (361/1299 nt)	PP_3889	putative Phage integrase

GAACATCTGTCGCAGGTAGGACAGGGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4407343‑4407467 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgccACCCGCGCAGCAATTGGGCAGCATGTGCGGCCGTGCTTAGGCGATCTGCCGATCAAGTACATCACCGCCGAGCTGATTGATAAGCACCTGATCTGGCCCGGCCAGGCCAAGCTGTCCCTGTCCTACCTGCGACAGATGTTCGGCA  <  NC_002947/4407483‑4407339                                                                                                                                                                                                                                                                                GAACATCTGTCGCAGGTAGGACAGGGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCACCCGCGCAGCAATTGGGCAGCAT                                                                                                                           <  4:266969/149‑1          TCGCAGGTAGGACAGGGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCACCCGCGCAGCAATTGGGCAGCATGTGCGGCC                                                                                                                   <  2:51962/148‑1                               CTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCACCCGCGCAGCAATTGGGCAGCATGT                                                                                                                         <  3:170578/121‑1                               CTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCACCCGCGCAGCAATTGGGCAGCATGT                                                                                                                         >  4:170578/1‑121                                                                                                                          TGCCACCCGCGCAGCAATTGGGCAGCATGTGCGGCCGTGCTTAGGCGATCTGCCGATCAAGTACATCACCGCCGAGCTGATTGATAAGCACCTGATCTGGCCCGGCCAGGCCAAGCTGTCCCTGTCCTACCTGCGACAGATGTTCGGCA  >  6:39227/1‑149                                                                                                                                                                                                                                                                                GAACATCTGTCGCAGGTAGGACAGGGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4407343‑4407467 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgccACCCGCGCAGCAATTGGGCAGCATGTGCGGCCGTGCTTAGGCGATCTGCCGATCAAGTACATCACCGCCGAGCTGATTGATAAGCACCTGATCTGGCCCGGCCAGGCCAAGCTGTCCCTGTCCTACCTGCGACAGATGTTCGGCA  <  NC_002947/4407483‑4407339

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.