New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 440746775 (1.270)4 (0.070) 4/244 NT 5.2% coding (377/1299 nt) PP_3889 putative Phage integrase
?NC_002947 = 4407483 74 (1.310)coding (361/1299 nt) PP_3889 putative Phage integrase

CAGCATGCCGAACATCTGTCGCAGGTAGGACAGGGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGTGCGGTGGCCGGGTGGCGCATCAGGCGCTGACG  >  NC_002947/4407334‑4407615
                                                                                                                                     |                                                                                                                                                    
cagcaTGCCGAACATCTGTCGCAGGTAGGACAGGGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATtgctgc                                                                                                                                            <  7:362167/144‑1 (MQ=255)
cagcaTGCCGAACATCTGTCGCAGGTAGGACAGGGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATtgctgc                                                                                                                                            >  8:362167/1‑144 (MQ=255)
cagcaTGCCGAACATCTGTCGCAGGTAGGACAGGGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGACTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGAgga                                                                                                                                       >  4:163396/1‑148 (MQ=255)
     tGCCGAACATCTGTCGCAGGTAGGACAGGGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTggca                                                                                                                                  >  6:39227‑M2/1‑145 (MQ=255)
        cGAACATCTGTCGCAGGTAGGACAGGGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCTGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGcc                                                                                                                               <  1:248764/149‑1 (MQ=255)
         gAACATCTGTCGCAGGTAGGACAGGGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCacccgcgcagcaattgggcagcat                                                                                                                              <  4:266969‑M1/149‑25 (MQ=255)
         gAACATCTGTCGCAGGTAGGACAGGGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCggg                                                                                                                                       <  1:281261/140‑1 (MQ=255)
         gAACATCTGTCGCAGGTAGGACAGGGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCggg                                                                                                                                       >  2:281261/1‑140 (MQ=255)
         gAACATCTGTCGCAGGTAGGACAGGGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGAGCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCt                                                                                                                              <  6:256926/149‑1 (MQ=255)
         gAACATCTGTCGCAGGTAGGACAGGGACAGCTTGGCATGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGATGCGCGGGTGGCAGCCt                                                                                                                              >  7:344139/1‑149 (MQ=255)
                 gTCGCAGGTAGGACAGGGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCttt                                                                                                                      >  7:222386/1‑149 (MQ=255)
                  tCGCAGGTAGGACAGGGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCacccgcgcagcaattgggcagcatgtgcggcc                                                                                                                      <  2:51962‑M1/148‑33 (MQ=255)
                    gCAGGTAGGACAGGGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTg                                                                                                                     >  2:377199/1‑147 (MQ=255)
                    ccAGGTAGGACAGGGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGc                                                                                                                    <  5:333376/147‑1 (MQ=255)
                      aGGTAGGACAGGGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGa                                                                                                                 >  4:345844/1‑149 (MQ=255)
                             acagggacagCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAg                                                                                                          >  5:10922/1‑149 (MQ=255)
                             acagggacagCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAg                                                                                                          <  7:290585/149‑1 (MQ=255)
                                   acagCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCa                                                                                                    >  1:12882/1‑149 (MQ=255)
                                    cagCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCAt                                                                                                   <  5:138712/149‑1 (MQ=255)
                                     agCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATg                                                                                                  <  2:12882/149‑1 (MQ=255)
                                      gCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATgg                                                                                                 >  8:232779/1‑149 (MQ=255)
                                      gCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATgg                                                                                                 <  1:377199/149‑1 (MQ=255)
                                       cTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCacccgcgcagcaattgggcagcatgt                                                                                                                            <  3:170578‑M1/121‑27 (MQ=255)
                                       cTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCacccgcgcagcaattgggcagcatgt                                                                                                                            >  4:170578‑M1/1‑95 (MQ=255)
                                       cTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGc                                                                                                >  7:228970/1‑149 (MQ=255)
                                        ttGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGTGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCt                                                                                               >  4:201642/1‑149 (MQ=255)
                                          ggcctggccGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCt                                                                                               <  3:345844/147‑1 (MQ=255)
                                           gcctggccGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCa                                                                                             <  7:232779/148‑1 (MQ=255)
                                                gccGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCTGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGt                                                                                       >  3:316353/1‑149 (MQ=255)
                                                gccGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGt                                                                                       >  6:205640/1‑149 (MQ=255)
                                                gcagctccAGATCAGGAGCTTATCAATAAGCTCGGCGGTGATGTACTAGAACTGCAGATAGCCTAATCACGGCAGCACATGCTCACCAAATCCTGAGAGGTATGCAGCCGTACGCTTTTCATACAACAACCTATCATGGATCATGCGGt                                                                                       >  6:320426/7‑149 (MQ=255)
                                                 ccGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTc                                                                                      <  8:228970/149‑1 (MQ=255)
                                                   gggCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGATCTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGa                                                                                    <  1:315617/149‑1 (MQ=255)
                                                    ggCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCttt                                                                                                                      >  1:190302/1‑114 (MQ=255)
                                                    ggCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCttt                                                                                                                      <  2:190302/114‑1 (MQ=255)
                                                     gCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACa                                                                                  >  5:374021/1‑149 (MQ=255)
                                                        aGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATAc                                                                               <  8:222386/149‑1 (MQ=255)
                                                             aGGTGCTTATCAATCATCGCGGCTCTGATTTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGGGGGTGGCAGCCTTACGCTTTGCAGACAACGATCGATCATGGCTCATGCGGTCGACATACCAGt                                                                           <  8:344139/148‑1 (MQ=255)
                                                              ggTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTc                                                                          >  5:134605/1‑148 (MQ=255)
                                                               gTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTc                                                                          >  3:256286/1‑147 (MQ=255)
                                                                tGCTTATCAATCAGCTCGGCGGTCATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAg                                                                       <  3:216086/149‑1 (MQ=255)
                                                                   ttATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAg                                                                    >  3:364837/1‑149 (MQ=255)
                                                                     atcaatcaGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGTGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAg                                                                    <  3:201642/147‑1 (MQ=255)
                                                                      tcaatcaGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGtt                                                                  <  5:205640/148‑1 (MQ=255)
                                                                       caatcaGCTCGGCGGTGAAGTACTTGATCCGCAGATAGCCTAAGCACGGCCGCACATGCTGCCAAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGACGTCGACATACCAGTACAGCAGATgg                                                                >  4:261025/1‑149 (MQ=255)
                                                                        aatcaGCTCGGCGGTGATGTACTTGATCGGGAGATCGCCTAAGCACGTCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTgg                                                                <  5:320426/148‑1 (MQ=255)
                                                                        aatcaGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTgg                                                                <  4:364837/148‑1 (MQ=255)
                                                                        aatcaGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTg                                                                 <  2:260543/147‑1 (MQ=255)
                                                                        aatcaGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTg                                                                 >  1:260543/1‑147 (MQ=255)
                                                                          tcaGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATc                                                                                                     <  4:56820/109‑1 (MQ=255)
                                                                          tcaGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATc                                                                                                     >  3:56820/1‑109 (MQ=255)
                                                                             gatCGGCGGTGATGTACTTGATCGGCTGATCGACTAAGCACCTCCGAACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCATACAACGAGAGATCATGGCTCATGCTTTCGACATACCATTCGAGAAGTTGTccaaag                                                          >  6:138136/3‑145 (MQ=255)
                                                                             gCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGt                                                                           >  3:33403/1‑132 (MQ=255)
                                                                             gCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGt                                                                           <  4:33403/132‑1 (MQ=255)
                                                                             gCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACg                                                          <  4:256286/149‑1 (MQ=255)
                                                                             gCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACg                                                          <  6:134605/149‑1 (MQ=255)
                                                                                   cggTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGcc                                                    <  6:374021/149‑1 (MQ=255)
                                                                                   cggTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGc                                                     >  5:20232/1‑148 (MQ=255)
                                                                                    ggTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCa                                                   >  3:13467/1‑149 (MQ=255)
                                                                                          gTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGccc                                              >  7:260773/1‑148 (MQ=255)
                                                                                             cTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCACGaca                                          >  5:226930/1‑149 (MQ=255)
                                                                                                    ggCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACcg                                    <  6:10922/148‑1 (MQ=255)
                                                                                                     gCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACcggt                                  >  8:45143/1‑149 (MQ=255)
                                                                                                      cAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTTGCCCACGGGGGCCATGCCCGACACTACcggtg                                 <  3:163396/149‑1 (MQ=255)
                                                                                                        gATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACcggtgcg                               >  7:273048/1‑149 (MQ=255)
                                                                                                             ccTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGTGCGGTGGc                          >  7:175153/1‑149 (MQ=255)
                                                                                                              cTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGTGCGGTGGcc                         >  1:100410/1‑149 (MQ=255)
                                                                                                               tAAGCAGGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGTGCGGTGGCCg                        >  8:141824/1‑149 (MQ=255)
                                                                                                                 aGCACGGCTGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGTGCGGTGGCCgg                       <  4:316353/148‑1 (MQ=255)
                                                                                                                 aGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGTGCGGTGGCCgg                       <  8:175153/148‑1 (MQ=255)
                                                                                                                  gCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGTGCGGTGGCCGGGt                     >  3:263440/1‑149 (MQ=255)
                                                                                                                   cACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGTGCGGTGGcc                         <  3:25586/144‑1 (MQ=255)
                                                                                                                   cACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGTGCGGTGGcc                         >  4:25586/1‑144 (MQ=255)
                                                                                                                    aCGGCCGCACATGCTGCCCAATTGCTGAGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGTGCGGTGGCCGGGTgg                   >  2:361026/1‑149 (MQ=255)
                                                                                                                      ggCCGCACATGCTGCCCAATTGCTGCGCGGGTggcagcatgtgcggccgtgcttaggcgatctgccgatcaagtacatcaccgccgagctgattgataagcacctgatctggcccggccaggccaagctgtccctgtcctacctgcga                  <  2:51962‑M2/148‑117 (MQ=255)
                                                                                                                        ccGCACATGCTGCCCAATTTCTGCGCGGGTCGCAGCCTTAAGCTATGCAGACAACGAGCGATCATGGCTCATGAGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGTGCGGTGGCCGGGTGgcgc                >  8:7373/1‑148 (MQ=255)
                                                                                                                          gCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGTGCGGTGGCCGGGTGGCGCAt              >  6:252324/1‑148 (MQ=255)
                                                                                                                            acaTGCTGCCCAATTGCTGCGCGGGTggcagcatgtgcggccgtgcttaggcgatctgccgatcaagtacatcaccgccgagctgattgataagcacctgatctggcccggccaggccaag                                       >  4:170578‑M2/1‑26 (MQ=255)
                                                                                                                            acaTGCTGCCCAATTGCTGCGCGGGTggcagcatgtgcggccgtgcttaggcgatctgccgatcaagtacatcaccgccgagctgattgataagcacctgatctggcccggccaggccaag                                       <  3:170578‑M2/121‑96 (MQ=255)
                                                                                                                            acaTGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGTGCGGTGGCCGGGTGGCGCATCAg           >  6:48590/1‑149 (MQ=255)
                                                                                                                             caTGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGTGCGGTGGCCGGGTGGCGCATCAgg          <  7:45143/149‑1 (MQ=255)
                                                                                                                             caTGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTAGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGTGCGGTGGCCGGGTGGCGCATCAgg          <  8:260773/149‑1 (MQ=255)
                                                                                                                              aTGCTGCCCAATTGCTGCGCGGGTggcagcatgtgcggccgtgcttaggcgatctgccgatcaagtacatcaccgccgagctgattgataagcacctgatctggcccggccaggccaagctgtccctgtcctacctgcgacagatgttc         <  4:266969‑M2/149‑126 (MQ=255)
                                                                                                                               tgctgcCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGTGCGGTGGCCGGGTGGCGCATCAGgcg        >  6:58609/1‑149 (MQ=255)
                                                                                                                                  tgcCacccgcgcagcaattgggcagcatgtgcggccgtgcttaggcgatctgccgatcaagtacatcaccgccgagctgattgataagcacctgatctggcccggccaggccaagctgtccctgtcctacctgcgacagatgttcggca     >  6:39227‑M1/1‑4 (MQ=255)
                                                                                                                                    cccAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGTGCGGTGGCCGGGTGGCGCATCAGGCGCTGa    <  4:13467/148‑1 (MQ=255)
                                                                                                                                    cccAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGTGCGGTGGCCGGGTGGCGCATCAGGCGCTGa    <  5:48590/148‑1 (MQ=255)
                                                                                                                                    cccAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGTGCGGTGGCCGGGTGGCGCATCAGGCGCTGAc   >  8:35075/1‑149 (MQ=255)
                                                                                                                                     ccAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGTGCGGTGGCCGGGTGGCGCATCAGGCGCTGACg  <  8:273048/149‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                                    
CAGCATGCCGAACATCTGTCGCAGGTAGGACAGGGACAGCTTGGCCTGGCCGGGCCAGATCAGGTGCTTATCAATCAGCTCGGCGGTGATGTACTTGATCGGCAGATCGCCTAAGCACGGCCGCACATGCTGCCCAATTGCTGCGCGGGTGGCAGCCTTACGCTTTGCAGACAACGAGCGATCATGGCTCATGCGGTCGACATACCAGTCGAGCAGTTGGCCCACGGTGGCCATGCCCGACACTACCGGTGCGGTGGCCGGGTGGCGCATCAGGCGCTGACG  >  NC_002947/4407334‑4407615

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.