New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4653266	37 (0.630)	3 (0.050)	3/246	NT	7.0%	coding (107/333 nt)	PP_5659	hypothetical protein
	?	NC_002947	= 4653333	44 (0.770)					coding (174/333 nt)	PP_5659	hypothetical protein

GGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4653184‑4653266 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacgCGATTGCCAGTACTGCGGTGATGCGCTTCCGTCCCTCGGGACAACTTCTTCGTTGCAGTCGCAATCCCGTCGAACCGCCTTGTGGGCCGTATAGACACGAGGCGCCTCCTGGGGTGGAAGGAGCGCGCCCCGAAG  <  NC_002947/4653333‑4653199                                                                                                                                                                                                                            GGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGCGATTGCCAGTACTGCGGTGATGCGCTTCCGTCCCTCGGGACAACTTCTTCGTTGCAGTCGCAATC                                                                       <  2:228735/149‑1                                      CCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGCGATTGCCAGTACTGCGGTGATGCGCTTCCGTCCCTCGGGACAACTTCTTCGTTGCAGTCGCTATCCCGTCG                                                                 <  5:225898/118‑1                                      CCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGCGATTGCCAGTACTGCGGTGATGCGCTTCCGTCCCTCGGGACAACTTCTTCGTTGCAGTCGCAATCCCGTCG                                                                 >  6:225898/1‑118                                                                               CGACGCGATTGCCAGTACTGCGGTGATGCGCTTCCGTCCCTCGGGACAACTTCTTCGTTGCAGTCGCAATCCCGTCGAACCGCCTTGTGG                                                    >  7:109552/1‑90                                                                               CGACGCGATTGCCAGTACTGCGGTGATGCGCTTCCGTCCCTCGGGACAACTTCTTCGTTGCAGTCGCAATCCCGTCGAACCGCCTTGTGG                                                    <  8:109552/90‑1                                                                                GACGCGATTGCCAGTACTGCGGTGATGCGCTTCCGTCCCTCGGGACAACTTCTTCGTTGCAGTCGCAATCCCGTCGAACCGCCTTGTGGGCCGTATAGACACGAGGCGCCTCCTGGGGTGGAAGGAGCGCGCCCCGAAG  >  1:175656/1‑139                                                                                GACGCGATTGCCAGTACTGCGGTGAGGCGCTTCCGTCCCTCGGGACAACTTCTTCGTTGCAGTCGCAATCCCGTCGAACCGCCTTGTGGGCCGTATAGACACGAGGCGCCTCCTGGGGTGGAAGGAGCGCGCCCCGAAG  <  2:175656/139‑1                                                                                                                                                                                                                            GGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4653184‑4653266 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgacgCGATTGCCAGTACTGCGGTGATGCGCTTCCGTCCCTCGGGACAACTTCTTCGTTGCAGTCGCAATCCCGTCGAACCGCCTTGTGGGCCGTATAGACACGAGGCGCCTCCTGGGGTGGAAGGAGCGCGCCCCGAAG  <  NC_002947/4653333‑4653199

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.