New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4653266 | 37 (0.630) | 3 (0.050) | 3/246 | NT | 7.0% | coding (107/333 nt) | PP_5659 | hypothetical protein |
? | NC_002947 | = 4653333 | 44 (0.770) | coding (174/333 nt) | PP_5659 | hypothetical protein |
CACTACAAAACATTTGACAGGGTCTTTTTCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCCTGGTCTGCCCACCCTTCCCCTTC > NC_002947/4653119‑4653410 | cACTACAAAACATTTGACAGGGTCTTTTTCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACgg > 3:165445/1‑149 (MQ=255) aCTACAAAACATTTGACAGGGTCTTTTTCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACggg < 3:295561/149‑1 (MQ=255) aCTACAAAACATTTGACAGGGTCTTTTTCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACggg < 3:217082/149‑1 (MQ=255) cTACAAAACATTTGACAGGGTCTTTTTCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGa < 1:11420/149‑1 (MQ=255) cTACAAAACATTTGACAGGGTCTTTTTCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGa < 3:343064/149‑1 (MQ=255) tACAAAACATTTGACAGGGTCTTTTTCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGAt > 4:338042/1‑149 (MQ=255) tACAAAACATTTGACAGGGTCTTTTTCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGAt > 1:227893/1‑149 (MQ=255) cAAAACATTTGACAGGGTCTTTTTCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTg > 8:360155/1‑149 (MQ=255) aaaaCATTTGACAGGGTCTTTTTCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGc > 4:347142/1‑149 (MQ=255) aTTTGACAGGGTCTTTTTCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTg < 3:125667/149‑1 (MQ=255) aGGGTCTTTTTCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACgaa < 2:255939/149‑1 (MQ=255) ggTCTTTTTCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACgaag > 5:60808/1‑148 (MQ=255) gTCTTTTTCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACgaagaa < 3:338042/149‑1 (MQ=255) tttCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGtt < 4:165445/147‑1 (MQ=255) cAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTccc > 5:279550/1‑147 (MQ=255) cAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGa < 5:188952/149‑1 (MQ=255) cAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGa < 3:347142/149‑1 (MQ=255) gCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGAc > 4:350002/1‑149 (MQ=255) tgGCCGCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAgc < 1:36296/149‑1 (MQ=255) cttccgagCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAgc < 7:352075/142‑1 (MQ=255) gCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAgcg < 3:112506/148‑1 (MQ=255) ccGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAgc > 8:352075/1‑138 (MQ=255) tAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGcccaac > 1:323450/1‑144 (MQ=255) aaTCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACt > 5:356409/1‑149 (MQ=255) tCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTgg < 6:279550/149‑1 (MQ=255) ggggCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAgc < 3:1812/128‑1 (MQ=255) ggggCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAgc > 4:1812/1‑128 (MQ=255) ggCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGcgattgccagtactgcggtgatgcgcttccgtccctcgggacaacttcttcgttgcagtcgcaatc < 2:228735‑M1/149‑67 (MQ=255) ggCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAAGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCg > 1:305199/1‑148 (MQ=255) ccTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCgcag < 2:227893/149‑1 (MQ=255) cTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCCTCACCGCAGTACTGGCAATCGcgtc < 2:175656‑M2/139‑5 (MQ=255) cTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGcgtc > 1:175656‑M2/1‑135 (MQ=255) cgcgcTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAAc < 8:326071/149‑1 (MQ=255) cACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGAc > 4:221453/1‑149 (MQ=255) cccAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGcgattgccagtactgcggtgatgcgcttccgtccctcgggacaacttcttcgttgcagtcgctatcccgtcg < 5:225898‑M1/118‑73 (MQ=255) cccAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGcgattgccagtactgcggtgatgcgcttccgtccctcgggacaacttcttcgttgcagtcgcaatcccgtcg > 6:225898‑M1/1‑46 (MQ=255) ggCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGc < 3:350002/149‑1 (MQ=255) gcgcCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGca < 7:360155/149‑1 (MQ=255) cTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAACCGACCTGCCGGAGCACAcc > 7:209380/1‑149 (MQ=255) tataCGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCCTg > 2:89253/1‑149 (MQ=255) taCGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAg > 7:164430/1‑133 (MQ=255) taCGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAg < 8:164430/133‑1 (MQ=255) taCGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCCt < 6:356409/146‑1 (MQ=255) taCGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCCTGGt < 3:221453/149‑1 (MQ=255) aCGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCCTGGTc > 7:206946/1‑149 (MQ=255) cGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAACCGACCTGCCGGAGCACACCTTCGCCTGGTCt < 8:209380/149‑1 (MQ=255) ccACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGcgtcg > 7:109552‑M2/1‑85 (MQ=255) ccACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGcgtcg < 8:109552‑M2/90‑6 (MQ=255) gCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCCTGGTCTGCCCAcccttc < 6:60808/149‑1 (MQ=255) gTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCCTGGTCTGCCCAcccttcccc > 3:342682/1‑149 (MQ=255) gTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCCTGGTCTGCCCAcccttcccc > 7:9738/1‑149 (MQ=255) cGACGcgattgccagtactgcggtgatgcgcttccgtccctcgggacaacttcttcgttgcagtcgcaatcccgtcgaaccgccttgtgg < 8:109552‑M1/90‑86 (MQ=255) cGACGcgattgccagtactgcggtgatgcgcttccgtccctcgggacaacttcttcgttgcagtcgcaatcccgtcgaaccgccttgtgg > 7:109552‑M1/1‑5 (MQ=255) cGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGcgtcgaaccgccttgtgggccgtatagacacgaggcgcctcctggg > 6:225898‑M2/1‑72 (MQ=255) cGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCCTGGTCTGCCCAcccttccccttc > 1:343059/1‑149 (MQ=255) cGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCCTGGTCTGCCCAcccttcccctt < 2:305199/148‑1 (MQ=255) cGACGGGATAGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGcgtcgaaccgccttgtgggccgtatagacacgaggcgcctcctggg < 5:225898‑M2/118‑47 (MQ=255) gACGcgattgccagtactgcggtgatgcgcttccgtccctcgggacaacttcttcgttgcagtcgcaatcccgtcgaaccgccttgtgggccgtatagacacgaggcgcctcctggggtggaaggagcgcgccccgaag > 1:175656‑M1/1‑4 (MQ=255) gACGcgattgccagtactgcggtgaggcgcttccgtccctcgggacaacttcttcgttgcagtcgcaatcccgtcgaaccgccttgtgggccgtatagacacgaggcgcctcctggggtggaaggagcgcgccccgaag < 2:175656‑M1/139‑136 (MQ=255) aCGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCCTGGTCTGCCCAcccttccccttc > 4:169592/1‑147 (MQ=255) | CACTACAAAACATTTGACAGGGTCTTTTTCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCCTGGTCTGCCCACCCTTCCCCTTC > NC_002947/4653119‑4653410 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |