New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 465326637 (0.630)3 (0.050) 3/246 NT 7.0% coding (107/333 nt) PP_5659 hypothetical protein
?NC_002947 = 4653333 44 (0.770)coding (174/333 nt) PP_5659 hypothetical protein

CACTACAAAACATTTGACAGGGTCTTTTTCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCCTGGTCTGCCCACCCTTCCCCTTC  >  NC_002947/4653119‑4653410
                                                                                                                                                   |                                                                                                                                                
cACTACAAAACATTTGACAGGGTCTTTTTCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACgg                                                                                                                                                 >  3:165445/1‑149 (MQ=255)
 aCTACAAAACATTTGACAGGGTCTTTTTCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACggg                                                                                                                                                <  3:295561/149‑1 (MQ=255)
 aCTACAAAACATTTGACAGGGTCTTTTTCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACggg                                                                                                                                                <  3:217082/149‑1 (MQ=255)
  cTACAAAACATTTGACAGGGTCTTTTTCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGa                                                                                                                                               <  1:11420/149‑1 (MQ=255)
  cTACAAAACATTTGACAGGGTCTTTTTCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGa                                                                                                                                               <  3:343064/149‑1 (MQ=255)
   tACAAAACATTTGACAGGGTCTTTTTCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGAt                                                                                                                                              >  4:338042/1‑149 (MQ=255)
   tACAAAACATTTGACAGGGTCTTTTTCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGAt                                                                                                                                              >  1:227893/1‑149 (MQ=255)
     cAAAACATTTGACAGGGTCTTTTTCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTg                                                                                                                                            >  8:360155/1‑149 (MQ=255)
      aaaaCATTTGACAGGGTCTTTTTCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGc                                                                                                                                           >  4:347142/1‑149 (MQ=255)
           aTTTGACAGGGTCTTTTTCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTg                                                                                                                                      <  3:125667/149‑1 (MQ=255)
                  aGGGTCTTTTTCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACgaa                                                                                                                               <  2:255939/149‑1 (MQ=255)
                    ggTCTTTTTCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACgaag                                                                                                                              >  5:60808/1‑148 (MQ=255)
                     gTCTTTTTCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACgaagaa                                                                                                                            <  3:338042/149‑1 (MQ=255)
                          tttCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGtt                                                                                                                         <  4:165445/147‑1 (MQ=255)
                               cAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTccc                                                                                                                    >  5:279550/1‑147 (MQ=255)
                               cAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGa                                                                                                                  <  5:188952/149‑1 (MQ=255)
                               cAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGa                                                                                                                  <  3:347142/149‑1 (MQ=255)
                                    gCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGAc                                                                                                             >  4:350002/1‑149 (MQ=255)
                                          tgGCCGCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAgc                                                                                                       <  1:36296/149‑1 (MQ=255)
                                          cttccgagCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAgc                                                                                                       <  7:352075/142‑1 (MQ=255)
                                            gCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAgcg                                                                                                      <  3:112506/148‑1 (MQ=255)
                                                     ccGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAgc                                                                                                       >  8:352075/1‑138 (MQ=255)
                                                         tAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGcccaac                                                                                        >  1:323450/1‑144 (MQ=255)
                                                          aaTCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACt                                                                                       >  5:356409/1‑149 (MQ=255)
                                                            tCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTgg                                                                                     <  6:279550/149‑1 (MQ=255)
                                                               ggggCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAgc                                                                                                       <  3:1812/128‑1 (MQ=255)
                                                               ggggCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAgc                                                                                                       >  4:1812/1‑128 (MQ=255)
                                                                 ggCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGcgattgccagtactgcggtgatgcgcttccgtccctcgggacaacttcttcgttgcagtcgcaatc                                                                                <  2:228735‑M1/149‑67 (MQ=255)
                                                                             ggCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAAGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCg                                                                     >  1:305199/1‑148 (MQ=255)
                                                                               ccTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCgcag                                                                  <  2:227893/149‑1 (MQ=255)
                                                                                cTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCCTCACCGCAGTACTGGCAATCGcgtc                                                                           <  2:175656‑M2/139‑5 (MQ=255)
                                                                                cTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGcgtc                                                                           >  1:175656‑M2/1‑135 (MQ=255)
                                                                                        cgcgcTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAAc                                                         <  8:326071/149‑1 (MQ=255)
                                                                                                   cACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGAc                                              >  4:221453/1‑149 (MQ=255)
                                                                                                      cccAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGcgattgccagtactgcggtgatgcgcttccgtccctcgggacaacttcttcgttgcagtcgctatcccgtcg                                                                          <  5:225898‑M1/118‑73 (MQ=255)
                                                                                                      cccAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGcgattgccagtactgcggtgatgcgcttccgtccctcgggacaacttcttcgttgcagtcgcaatcccgtcg                                                                          >  6:225898‑M1/1‑46 (MQ=255)
                                                                                                             ggCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGc                                    <  3:350002/149‑1 (MQ=255)
                                                                                                              gcgcCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGca                                   <  7:360155/149‑1 (MQ=255)
                                                                                                                  cTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAACCGACCTGCCGGAGCACAcc                               >  7:209380/1‑149 (MQ=255)
                                                                                                                          tataCGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCCTg                       >  2:89253/1‑149 (MQ=255)
                                                                                                                            taCGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAg                                     >  7:164430/1‑133 (MQ=255)
                                                                                                                            taCGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAg                                     <  8:164430/133‑1 (MQ=255)
                                                                                                                            taCGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCCt                        <  6:356409/146‑1 (MQ=255)
                                                                                                                            taCGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCCTGGt                     <  3:221453/149‑1 (MQ=255)
                                                                                                                             aCGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCCTGGTc                    >  7:206946/1‑149 (MQ=255)
                                                                                                                              cGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAACCGACCTGCCGGAGCACACCTTCGCCTGGTCt                   <  8:209380/149‑1 (MQ=255)
                                                                                                                                  ccACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGcgtcg                                                                          >  7:109552‑M2/1‑85 (MQ=255)
                                                                                                                                  ccACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGcgtcg                                                                          <  8:109552‑M2/90‑6 (MQ=255)
                                                                                                                                         gCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCCTGGTCTGCCCAcccttc        <  6:60808/149‑1 (MQ=255)
                                                                                                                                            gTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCCTGGTCTGCCCAcccttcccc     >  3:342682/1‑149 (MQ=255)
                                                                                                                                            gTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCCTGGTCTGCCCAcccttcccc     >  7:9738/1‑149 (MQ=255)
                                                                                                                                               cGACGcgattgccagtactgcggtgatgcgcttccgtccctcgggacaacttcttcgttgcagtcgcaatcccgtcgaaccgccttgtgg                                                             <  8:109552‑M1/90‑86 (MQ=255)
                                                                                                                                               cGACGcgattgccagtactgcggtgatgcgcttccgtccctcgggacaacttcttcgttgcagtcgcaatcccgtcgaaccgccttgtgg                                                             >  7:109552‑M1/1‑5 (MQ=255)
                                                                                                                                               cGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGcgtcgaaccgccttgtgggccgtatagacacgaggcgcctcctggg                                 >  6:225898‑M2/1‑72 (MQ=255)
                                                                                                                                               cGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCCTGGTCTGCCCAcccttccccttc  >  1:343059/1‑149 (MQ=255)
                                                                                                                                               cGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCCTGGTCTGCCCAcccttcccctt   <  2:305199/148‑1 (MQ=255)
                                                                                                                                               cGACGGGATAGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGcgtcgaaccgccttgtgggccgtatagacacgaggcgcctcctggg                                 <  5:225898‑M2/118‑47 (MQ=255)
                                                                                                                                                gACGcgattgccagtactgcggtgatgcgcttccgtccctcgggacaacttcttcgttgcagtcgcaatcccgtcgaaccgccttgtgggccgtatagacacgaggcgcctcctggggtggaaggagcgcgccccgaag           >  1:175656‑M1/1‑4 (MQ=255)
                                                                                                                                                gACGcgattgccagtactgcggtgaggcgcttccgtccctcgggacaacttcttcgttgcagtcgcaatcccgtcgaaccgccttgtgggccgtatagacacgaggcgcctcctggggtggaaggagcgcgccccgaag           <  2:175656‑M1/139‑136 (MQ=255)
                                                                                                                                                 aCGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCCTGGTCTGCCCAcccttccccttc  >  4:169592/1‑147 (MQ=255)
                                                                                                                                                   |                                                                                                                                                
CACTACAAAACATTTGACAGGGTCTTTTTCCCAAGGGCATGATGGCCTCGCTCCCGCTAATCAGGGGCCCTGGCAAGGGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCCTGGTCTGCCCACCCTTCCCCTTC  >  NC_002947/4653119‑4653410

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.