New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4653266	37 (0.630)	3 (0.050)	3/246	NT	7.0%	coding (107/333 nt)	PP_5659	hypothetical protein
	?	NC_002947	= 4653333	44 (0.770)					coding (174/333 nt)	PP_5659	hypothetical protein

GGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGTCTGCCCACCCTTCCCCTTCGAGCCTTCGCGTTCGCCGCCGCATTCCTGCGAACAGGACAGCCGCCAGGCACCTGATCTGCTCCGAGCAT  >  NC_002947/4653196‑4653480                                                                                                                                          |                                                                                                                                                     ggCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAAGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCg                                                                                                                                            >  1:305199/1‑148 (MQ=255)   ccTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCgcag                                                                                                                                         <  2:227893/149‑1 (MQ=255)    cTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCCTCACCGCAGTACTGGCAATCGcgtc                                                                                                                                                  <  2:175656‑M2/139‑5 (MQ=255)    cTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGcgtc                                                                                                                                                  >  1:175656‑M2/1‑135 (MQ=255)            cgcgcTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAAc                                                                                                                                <  8:326071/149‑1 (MQ=255)                       cACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGAc                                                                                                                     >  4:221453/1‑149 (MQ=255)                                 ggCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGc                                                                                                           <  3:350002/149‑1 (MQ=255)                                  gcgcCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGca                                                                                                          <  7:360155/149‑1 (MQ=255)                                      cTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAACCGACCTGCCGGAGCACAcc                                                                                                      >  7:209380/1‑149 (MQ=255)                                              tataCGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑Tg                                                                                             >  2:89253/1‑149 (MQ=255)                                                taCGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAg                                                                                                            >  7:164430/1‑133 (MQ=255)                                                taCGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAg                                                                                                            <  8:164430/133‑1 (MQ=255)                                                taCGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑t                                                                                              <  6:356409/146‑1 (MQ=255)                                                taCGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGt                                                                                           <  3:221453/149‑1 (MQ=255)                                                 aCGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGTc                                                                                          >  7:206946/1‑149 (MQ=255)                                                  cGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAACCGACCTGCCGGAGCACACCTTCGCC‑TGGTCt                                                                                         <  8:209380/149‑1 (MQ=255)                                                      ccACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGcgtcg                                                                                                                                                 <  8:109552‑M2/90‑6 (MQ=255)                                                      ccACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGcgtcg                                                                                                                                                 >  7:109552‑M2/1‑85 (MQ=255)                                                             gCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGTCTGCCCAcccttc                                                                              <  6:60808/149‑1 (MQ=255)                                                                gTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGTCTGCCCAcccttcccc                                                                           >  3:342682/1‑149 (MQ=255)                                                                gTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGTCTGCCCAcccttcccc                                                                           >  7:9738/1‑149 (MQ=255)                                                                   cGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGcgtcgaaccgccttgtgggccgtatagacacgaggcgcctcctggg                                                                                                        >  6:225898‑M2/1‑72 (MQ=255)                                                                   cGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGTCTGCCCAcccttccccttc                                                                        >  1:343059/1‑149 (MQ=255)                                                                   cGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGTCTGCCCAcccttcccctt                                                                         <  2:305199/148‑1 (MQ=255)                                                                   cGACGGGATAGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGcgtcgaaccgccttgtgggccgtatagacacgaggcgcctcctggg                                                                                                        <  5:225898‑M2/118‑47 (MQ=255)                                                                     aCGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGTCTGCCCAcccttccccttc                                                                        >  4:169592/1‑147 (MQ=255)                                                                         gATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGcgtcgaaccgccttgtgggccgtatagacacgaggcgcctcctggggtggaaggagcgcgccccgaaggcccttgccagggcc                                                                   <  2:228735‑M2/149‑84 (MQ=255)                                                                                      aCGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGTCTGCCCACCCTTCCCCTTCGAGCCTTc                                                                <  7:125997/138‑1 (MQ=255)                                                                                      aCGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGTCTGCCCACCCTTCCCCTTCGAGCCTTc                                                                >  8:125997/1‑138 (MQ=255)                                                                                       cGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGTCTGCCCACCCTTCCCCTTCGAGCCTTCGCGTTcgccgcc                                                    >  7:785/1‑149 (MQ=255)                                                                                           gaagTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGTCTGCCCACCCTTCCCCTTCGAGCCTTCGCGTTCGCCGCCGCAt                                                >  3:283277/1‑149 (MQ=255)                                                                                               ttGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAg                                                                                                            <  3:205984/86‑1 (MQ=255)                                                                                               ttGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAg                                                                                                            >  4:205984/1‑86 (MQ=255)                                                                                               ttGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGTCTGCCCACCCTTCCCCTTCGAGCCTTCGCGTTCGCCGCCGCATTCCt                                            >  8:285378/1‑149 (MQ=255)                                                                                                  tCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGTCTGCCCACCCTTCCCCTTCGAGCCTTCGCGTTCGCCGCCGCATTCCTGc                                          >  7:265992/1‑148 (MQ=255)                                                                                                  tCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGTCTGCCCACCCTTCCCCTTCGAGCCTTCGCGTTCGCCGCCGCATTCCTGc                                          <  3:169592/148‑1 (MQ=255)                                                                                                  tCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGTCTGCCCACCCTTCCCCTTCGAGCCTTCGCGTTCGCCGCCGCATTCCTGCg                                         <  2:343059/149‑1 (MQ=255)                                                                                                     cGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGTCTGCCCACCCTTCCCCTTCGAGCCTTCGCGTTCGCCGCCGCATTCCTGCGaa                                       >  5:384990/1‑148 (MQ=255)                                                                                                     cGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGTCTGCCCACCCTTCCCCTTCGAGCCTTCGCGTTCGCCGCCGCATTCCTGCGaa                                       >  1:250600/1‑148 (MQ=255)                                                                                                        gggACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGTCTGCCCACCCTTCCCCTTCGAGCCTTCGCGTTCGCCGCCGCATTCCTGCGAACAgg                                   <  8:206946/149‑1 (MQ=255)                                                                                                           aCGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGTCTGCCCACCCTTCCCCTTCGAGCCTTCGCGTTCGCAGCCGCATTCCTGCGAACAGGa                                  >  7:72133/1‑147 (MQ=255)                                                                                                                aGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGTCTGCCCACCCTTCCCCTTCGAGCCTTCGCGTTCGCCGCCGCATTCCTGCGAACAGGACAgccgc                           <  4:283277/149‑1 (MQ=255)                                                                                                                 gcgcATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTc                                                                                                   >  2:15412/1‑77 (MQ=255)                                                                                                                 gcgcATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTc                                                                                                   <  1:15412/77‑1 (MQ=255)                                                                                                                    cATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAg                                                                                                            >  6:229866/1‑65 (MQ=255)                                                                                                                    cATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAg                                                                                                            <  5:229866/65‑1 (MQ=255)                                                                                                                        aCCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGTCTGCCCACCCTTCCCCTTCGAGCCTTCGCGTTCGCCGCCGCATTCCTGCGAACAGGACAGCCGCCAGGCAcc                   >  7:323303/1‑149 (MQ=255)                                                                                                                          cGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGTCTGCCCACCCTTCCCCTTCGAGCCTTCGCGTTCGCCGCCGCATTCCTGCGAACAGGACAGCCGCCAgg                       >  4:131529/1‑143 (MQ=255)                                                                                                                          cGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGTCTGCCCACCCTTCCCCTTCGAGCCTTCGCGTTCGCCGCCGCATTCCTGCGAACAGGACAGCCGCCAgg                       <  3:131529/143‑1 (MQ=255)                                                                                                                                   ggCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGTCTGCCCACCCTTCCCCTTCGAGCCTTCGCGTTCGCCGCCGCATTCCTGCGAACAGGACAGCCGCCAGGCACCTGATCTGCTcc        >  2:173189/1‑149 (MQ=255)                                                                                                                                    gCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGTCTGCCCACCCTTCCCCTTCGAGCCTTCGCGTTCGCCGCCGCATTCCTGCGAACAGGACAGCCGCCAGGCACCTGATCTGCTCCg       >  5:275886/1‑149 (MQ=255)                                                                                                                                     cAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGTCTGCCCACCCTTCCCCTTCGAGCCTTCGCGTTCGCCGCCGCATTCCTGCGAACAGGACAGCCGCCAGGCACCTGATCTGCTCCGa      <  8:323303/149‑1 (MQ=255)                                                                                                                                          gcgTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCCTTGGTCTGCCCACCCTTCCCCTTCGAGCCTTCGCGTTCGCCGCCGCATTCCTGCGAACAGGACAGCCGCCAGGCACCTGATCTGCTCCGAGCAt  >  1:103667/1‑149 (MQ=255)                                                                                                                                          gcgTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGTCTGCCCACCCTTCCCCTTCGAGCCTTCGCGTTCGCCGCCTCATTCCTGCGAACAGGACAGCCGCCAGGCACCTGATCTGCTCCGAGCAt  <  8:9738/148‑1 (MQ=255)                                                                                                                                          gcgTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGTCTGCCCACCCTTCCCCTTCGAGCCTTCGCGTTCGCCGCCGCATTCCTGCGAACAGGACAGCCGCCAGGCACCTGATCTGCTCCGAGCAt  <  6:384990/148‑1 (MQ=255)                                                                                                                                          gcgTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGGCTGCCCACCCTTCCCCTTCGAGCCTTCGCGTTCGCCGCCGCATTCCTGCGAACAGGACAGCCGCCAGGCACCTGATCTGCTCCGAGCAt  <  8:265992/148‑1 (MQ=255)                                                                                                                                          |                                                                                                                                                     GGCCTTCGGGGCGCGCTCCTTCCACCCCAGGAGGCGCCTCGTGTCTATACGGCCCACAAGGCGGTTCGACGGGATTGCGACTGCAACGAAGAAGTTGTCCCGAGGGACGGAAGCGCATCACCGCAGTACTGGCAATCGCGTCGCACCGCAGCAAGGCAACCACGAGCCGACCTGCCGGAGCACACCTTCGCC‑TGGTCTGCCCACCCTTCCCCTTCGAGCCTTCGCGTTCGCCGCCGCATTCCTGCGAACAGGACAGCCGCCAGGCACCTGATCTGCTCCGAGCAT  >  NC_002947/4653196‑4653480

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.