| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4930594 = | 67 (1.130) | 6 (0.110) | 5/238 | NT | 8.7% | coding (379/789 nt) | cheZ | protein phosphatase CheZ |
| ? | NC_002947 | 4930639 = | 63 (1.150) | coding (334/789 nt) | cheZ | protein phosphatase CheZ | |||||
GGCAGAAGAGGTGTCGCAGATTACCGACGCCACCGAGCGCCTGTCGTATGTGGTCAAGCTCACCGAGGGCGCGGCCAACCGCACCATGGACCTGGTCGAGGAAAGCACACCGGTGCTCAATGAGCTGGCCAACGAGGCCAAGGCCCTGAGCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4930748‑4930594‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgagcaccgGTGTGCTTTCCTCGACCAGGTCCATGGTGCGGTTGGCCGCGCCCTCGGTGAGCTTGACCACATACGACAGGCGCTCGGTGGCGTCGGTAATCTGCGACACCTCTTCTGCCTGCGGCATGGTGGGGTCGATCTGGAAACTGAC > NC_002947/4930639‑4930780 GGCAGAAGAGGTGTCGCAGATTACCGACGCCACCGAGCGCCTGTCGTATGTGGTCAAGCTCACCGAGGGCGCGGCCAACCGCACCATGGACCTGGTCGAGGAAAGCACACCGGTGCTCAATGAGCTGGCCAACGAGGCCAAGGCCCTGA < 8:2755/149‑1GGCAGAAGAGGTGTCGCAGATTACCGACGCCACCGAGCGCCTGTCGTATGTGGTCAAGCTCACCGAGGGCGCGGCCAACCGCACCATGGACCTGGTCGAGGAAAGCACACCGGTGCTCAATGAGCTGGCCAACGAGGCCAAGGCCCT > 7:2755/1‑147 AGAAGAGGTGTCGCAGATTACCGACGCCACCGAGCGCCTGTCGTATGTGGTCAAGCTCACCGAGGGCGCGGCCAACCGCACCATGGACCTGGTCGAGGAAAGCACACCGGTGCTCAATGAGCTGGCCAACGAGGCCAAGGCCCTGAGCA > 2:38518/1‑149 AAGAGGTGTCGCAGATTACCGACGCCACCGAGCGCCTGTCGTATGTGGTCAAGCTCACCGAGGGCGCGGCCAACCGCACCATGGACCTGGTCGAGGAAAGCACACCGGTGCTCAATGAGCTGGCCAACGAGGCCAAGGCCCTGAGCACC > 1:76849/1‑149 CACCGGTGCTCAATGAGCTGGCCAACGAGGCCAAGGCCCTGAGCACCGGTGTGCTTTCCTCGACCAGGTCCATGGTGCGGTTGGCCGCGCCCTCGGTGAGCTTGACCACATACGACAGGCGCTCGGTGGCGTCGGTAATCTGCGACACC > 3:186150/1‑149 GTGCTCAATGAGCTGGCCAACGAGGCCAAGGCCCTGAGCACCGGTGTGCTTTCCTCGACCAGGTCCATGGTGCGGTTGGCCGCGCCCTCGGTGAGCTTGACCACATACGACAGGCGCTCGGTGGCGTCGGTAATCTGC < 7:174023/138‑1 GTGCTCAATGAGCTGGCCAACGAGGCCAAGGCCCTGAGCACCGGTGTGCTTTCCTCGACCAGGTCCATGGTGCGGTTGGCCGCGCCCTCGGTGAGCTTGACCACATACGACAGGCGCTCGGTGGCGTCGGTAATCTGC > 8:174023/1‑138 GTGCTCAATGAGCTGGCCAACGAGGCCAAGGCCCTGAGCACCGGTGTGCTTTCCTCGACCAGGTCCATGGTGCGGTTGGCCGCGCCCTCGGTGAGCTTGACCACATACGACAGGCGCTCGGTGGC < 3:32976/125‑1 GTGCTCAATGAGCTGGCCAACGAGGCCAAGGCCCTGAGCACCGGTGTGCTTTCCTCGACCAGGTCCATGGTGCGGTTGGCCGCGCCCTCGGTGAGCTTGACCACATACGACAGGCGCTCGGTGGC > 4:32976/1‑125 CAAGGCCCTGAGCACCGGTGTGCTTTCCTCGACCAGGTCCATGGTGCGGTTGGCCGCGCCCTCGGTGAGCTTGACCACATACGACAGGCGCTCGGTGGCGTCGGTAATCTGCGACACCTCTTCTGCCTGCGGCATGGTGGGGTCGATCT < 4:186150/149‑1 GCACCGGTGTGCTTTCCTCGACCAGGTCCATGGTGCGGTTGGCCGCGCCCTCGGTGAGCTTGACCACATACGACAGGCGCTCGGTGGCGTCGGTAATCTGCGACACCTCTTCTGCCTGCGGCATGGTGGGGTCGATCTGGAAACTGAC > 6:222949/1‑148 ACCGGTGTGCTTTCCTCGACCAGGTCCATGGTGCGGTTGGCCGCGCCCTCGGTGAGCTTGACCACATACGACAGGCGCTCGGTGGCGTCGGTAATCTGCGACACCTCTTCTGCCTGCGGCATGGTG > 1:204415/1‑126 ACCGGTGTGCTTTCCTCGACCAGGTCCATGGTGCGGTTGGCCGCGCCCTCGGTGAGCTTGACCACATACGACAGGCGCTCGGTGGCGTCGGTAATCTGCGACACCTCTTCTGCCTGCGGCATGGTG < 2:204415/126‑1 GGCAGAAGAGGTGTCGCAGATTACCGACGCCACCGAGCGCCTGTCGTATGTGGTCAAGCTCACCGAGGGCGCGGCCAACCGCACCATGGACCTGGTCGAGGAAAGCACACCGGTGCTCAATGAGCTGGCCAACGAGGCCAAGGCCCTGAGCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4930748‑4930594‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgagcaccgGTGTGCTTTCCTCGACCAGGTCCATGGTGCGGTTGGCCGCGCCCTCGGTGAGCTTGACCACATACGACAGGCGCTCGGTGGCGTCGGTAATCTGCGACACCTCTTCTGCCTGCGGCATGGTGGGGTCGATCTGGAAACTGAC > NC_002947/4930639‑4930780 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |