New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5177969 = | 59 (1.000) | 3 (0.050) | 3/246 | NT | 5.1% | coding (16/1221 nt) | PP_4553 | ECF family RNA polymerase sigma‑70 factor |
? | NC_002947 | 5178009 = | 54 (0.950) | coding (479/486 nt) | PP_4554 | hypothetical protein |
CGTGCCTGGCACTGGAATGCCACCGACTGCCGGGCCCATGAAGAAATGGGCTTCCACCAGGGCTGGGGAGAAAGCCTGGACCGCCTGGTGGAGGTGGTGACCCAGCGGATGCCCGACTGATGGCCGCACTGGCCCAGGTGCGTGCCGAAGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5178121‑5177969 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtcgGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCAA > NC_002947/5178009‑5178156 CGTGCCTGGCACTGGAATGCCACCGACTGCCGGGCCCATGCAGAAATGGGCTTCCACCAGGGCTGGGGAGAAAGCCTGGACCCCCTGGGGGAGGTTGTGACCCAGCGGATGCCCGACTGATGGCCGCACTGGCCCAGGTGCGTGCCGAA < 1:85328/149‑1 CCGACTGATGGCCGCACTGGCCCAGGTGCGTGCCGAAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCTGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAG > 1:119388/1‑149 ACTGATGGCCGCACTGGCCCAGGTGCGTGCCGAAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGT < 7:275892/130‑1 ACTGATGGCCGCACTGGCCCAGGTGCGTGCCGAAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGT > 8:275892/1‑130 AGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTC < 8:78824/148‑1 GTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGT < 3:92699/149‑1 TCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTC < 2:85328/149‑1 GGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCAA < 5:335256/149‑1 CGTGCCTGGCACTGGAATGCCACCGACTGCCGGGCCCATGAAGAAATGGGCTTCCACCAGGGCTGGGGAGAAAGCCTGGACCGCCTGGTGGAGGTGGTGACCCAGCGGATGCCCGACTGATGGCCGCACTGGCCCAGGTGCGTGCCGAAGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5178121‑5177969 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtcgGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCAA > NC_002947/5178009‑5178156 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |