New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5177969 =	59 (1.000)	3 (0.050)	3/246	NT	5.1%	coding (16/1221 nt)	PP_4553	ECF family RNA polymerase sigma‑70 factor
	?	NC_002947	5178009 =	54 (0.950)					coding (479/486 nt)	PP_4554	hypothetical protein

CGGCAATGAAGAAGGCATCATGCATGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCAA  >  NC_002947/5177861‑5178156                                                                                                                                                     |                                                                                                                                                     ctggcactggaatgccaccgactgccgggcccatgaagaaatgggcttccaccagggctggggagaaagccaggaccgcctggtggaggtggtgacccagcggatgccCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCgg                                                                                                                                                      >  1:119388‑M1/109‑149 (MQ=255) cGGCAATGAAGAAGGCATCATGCATGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGGACCTGGGCCAGTGCGGCCATCAGTCgg                                                                                                                                                      <  4:248600/149‑1 (MQ=255)         aagaagGCATCATGCATGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGc                                                                                                                                              >  6:15762/1‑149 (MQ=255)                  tcatGCATGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTcacc                                                                                                                                     <  5:15762/149‑1 (MQ=255)                        atgGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTcc                                                                                                                               <  2:238529/149‑1 (MQ=255)                        atgGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTc                                                                                                                                >  6:343343/1‑148 (MQ=255)                        atgGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTc                                                                                                                                >  5:251511/1‑148 (MQ=255)                              tcctcGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTcaccac                                                                                                                                   <  4:213981/139‑1 (MQ=255)                              tcctcGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTcaccac                                                                                                                                   >  3:213981/1‑139 (MQ=255)                                  cGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCgg                                                                                                                                                      >  7:116090/1‑116 (MQ=255)                                  cGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCgg                                                                                                                                                      <  8:116090/116‑1 (MQ=255)                                      cAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAg                                                                                                                 >  7:76219/1‑149 (MQ=255)                                        ggTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGc                                                                                                               <  5:343343/149‑1 (MQ=255)                                         gTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCt                                                                                                              >  8:152866/1‑149 (MQ=255)                                          tCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCtt                                                                                                             >  8:75300/1‑149 (MQ=255)                                             aaaTCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTtct                                                                                                          <  1:229897/149‑1 (MQ=255)                                                tCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTccc                                                                                                       <  6:135542/149‑1 (MQ=255)                                                         aaGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCtgg                                                                                              <  7:222807/149‑1 (MQ=255)                                                         aaGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCtgg                                                                                              >  5:304167/1‑149 (MQ=255)                                                           gCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCtggtg                                                                                            <  8:76219/149‑1 (MQ=255)                                                            cGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCtggtgg                                                                                           <  7:75300/149‑1 (MQ=255)                                                              gATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGaa                                                                                         <  4:36278/149‑1 (MQ=255)                                                                   gtgtCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCAt                                                                                                                                                  >  2:183288/1‑87 (MQ=255)                                                                   gtgtCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCAt                                                                                                                                                  <  1:183288/87‑1 (MQ=255)                                                                   gtgtCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCa                                                                                    >  5:8286/1‑149 (MQ=255)                                                                   gtgtCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAATGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCa                                                                                    >  1:303806/1‑149 (MQ=255)                                                                     gtCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCAtt                                                                                  >  4:92699/1‑149 (MQ=255)                                                                        gCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATttct                                                                               <  1:145095/149‑1 (MQ=255)                                                                              aTGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑Tgg                                                                        >  6:335256/1‑149 (MQ=255)                                                                                  gccgcGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGccc                                                                    >  1:111079/1‑149 (MQ=255)                                                                                   ccgcGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGC‑TTCTCCCCAGCACTGGTGGAAGCCCATTTCTTCA‑TGGGCCCgg                                                                  >  3:81164/1‑149 (MQ=255)                                                                                        aCTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGt                                                              <  7:152866/149‑1 (MQ=255)                                                                                         cTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCtggtgg                                                                                           >  1:88549/1‑120 (MQ=255)                                                                                         cTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCtggtgg                                                                                           <  2:88549/120‑1 (MQ=255)                                                                                            cTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTCGGt                                                          >  4:8341/1‑149 (MQ=255)                                                                                             tGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCCCCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTCGGTg                                                         >  3:90497/1‑149 (MQ=255)                                                                                              gCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTc                                                             <  6:338165/144‑1 (MQ=255)                                                                                              gCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTc                                                             >  5:338165/1‑144 (MQ=255)                                                                                              gCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTCGGTgg                                                        >  3:7975/1‑149 (MQ=255)                                                                                                 ggTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTCGGTGGCAt                                                     >  2:298335/1‑149 (MQ=255)                                                                                                 ggTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTCGGTGGCAt                                                     <  2:111079/149‑1 (MQ=255)                                                                                                 ggTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTCGGAGGCa                                                      >  6:34324/1‑148 (MQ=255)                                                                                                    acacAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATttctt                                                                              <  4:283074/122‑1 (MQ=255)                                                                                                    acacAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATttctt                                                                              >  3:283074/1‑122 (MQ=255)                                                                                                          ccTCGGCTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAg                                                                                                                 >  5:225503/1‑81 (MQ=255)                                                                                                          ccTCGGCTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAg                                                                                                                 <  6:225503/81‑1 (MQ=255)                                                                                                           cTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTCGGTGGCATTCCAGTGCCa                                           <  5:34324/149‑1 (MQ=255)                                                                                                            ccgactgatggccgcactggcccaggtgcgtgccgaagtcgGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCTGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAg                                          >  1:119388‑M2/42‑149 (MQ=255)                                                                                                               actgatggccgcactggcccaggtgcgtgccgaagtcgGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTCGGt                                                          >  8:275892‑M2/39‑130 (MQ=255)                                                                                                               actgatggccgcactggcccaggtgcgtgccgaagtcgGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTCGGt                                                          <  7:275892‑M2/92‑1 (MQ=255)                                                                                                                 TTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACAACCTCCCCCAGGGGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTGCA‑TGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACg                                     <  1:85328‑M1/149‑1 (MQ=255)                                                                                                                    ggCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGc                                  <  4:7975/149‑1 (MQ=255)                                                                                                                         gcacCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGgtgt                             >  4:18478/1‑149 (MQ=255)                                                                                                                           acCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAg                           >  4:156530/1‑149 (MQ=255)                                                                                                                            ccTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTCGGTGGCATTCCa                                                 >  7:135886/1‑126 (MQ=255)                                                                                                                            ccTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTCGGTGGCATTCCa                                                 <  8:135886/126‑1 (MQ=255)                                                                                                                            ccTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGc                          <  2:303806/149‑1 (MQ=255)                                                                                                                                      tGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGcc                <  2:68491/149‑1 (MQ=255)                                                                                                                                      tGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGcc                <  2:195130/149‑1 (MQ=255)                                                                                                                                        cGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCATTGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGcc                <  1:298335/148‑1 (MQ=255)                                                                                                                                        cGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCt              <  3:8341/149‑1 (MQ=255)                                                                                                                                         ggCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTg             >  4:132435/1‑149 (MQ=255)                                                                                                                                          gCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGcc                >  2:254776/1‑145 (MQ=255)                                                                                                                                          gCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGcc                <  1:254776/145‑1 (MQ=255)                                                                                                                                           ccATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGtt           >  7:78824/1‑149 (MQ=255)                                                                                                                                             aTCAGTCGGGCATCCGCTGGGTCACCCCCTCCACCAGGCGGTCCAGGCATTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTcc         >  5:315546/1‑149 (MQ=255)                                                                                                                                             aTCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTcc         >  1:71747/1‑149 (MQ=255)                                                                                                                                                agtcgGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTc       <  8:78824‑M2/143‑1 (MQ=255)                                                                                                                                                 gtcgGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGt     <  3:92699‑M2/145‑1 (MQ=255)                                                                                                                                                  tcgGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTc    <  2:85328‑M2/146‑1 (MQ=255)                                                                                                                                                    gGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCaa  <  5:335256‑M2/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CGGCAATGAAGAAGGCATCATGCATGGCCTCCTCGGCCAGGTCGAAATCACCCAGCAAGCGGATCAGTGTCGCCAGTATGCGCCGCGACTCCTGCCGGTACACAGCCTCGACTTCGGCACGCACCTGGGCCAGTGCGGCCATCAGTCGGGCATCCGCTGGGTCACCACCTCCACCAGGCGGTCCAGGCTTTCTCCCCAGCCCTGGTGGAAGCCCATTTCTTCA‑TGGGCCCGGCAGTCGGTGGCATTCCAGTGCCAGGCACGGGCGGTGTAGCGGGTTTTGCCCTGTTCCTCGTCAA  >  NC_002947/5177861‑5178156

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.