| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5416755 = | 46 (0.780) | 7 (0.130) | 6/240 | NT | 15.5% | coding (929/1347 nt) | gudD | bifunctional D‑glucarate dehydratase/L‑idarate epimerase |
| ? | NC_002947 | 5416799 = | 33 (0.600) | coding (885/1347 nt) | gudD | bifunctional D‑glucarate dehydratase/L‑idarate epimerase | |||||
TACGCCGAAGACCCCTGCGGCGCCGAGAACGGTTACTCGGGCCGCGAGGTGATGGCCGAGTTCCGCCGCGCCACCGGGCTGCCCACCGCGACCAACATGATCGCTACCGACTGGCGACAGATGGGCCATGCCATTCAGTTACAGTCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5416903‑5416755‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtcggtAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAGGCCAGCACATTGTGCTTGTCACGGCACAGGGCGATGGCCTCC > NC_002947/5416799‑5416946 TACGCCGAAGACCCCTGCGGCGCCGAGAACGGTTACTCGGGCCGCGAGGTGATGGCCGAGTTCCGCCGCGCCACCGGGCTGCCCACCGCGACCAACATGATCGCTACCGACTGGCGACAGATGGGCCATGCCATTCAGTTACAGTCGGT > 8:36850/1‑149 GATCGCTACCGACTGGCGACAGATGGGCCATGCCATTCAGTTACAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCT > 6:239845/1‑148 TACCGACTGGCGACAGATGGGCCATGCCATTCAGTTACAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCG > 2:326663/1‑148 TACCGACTGGCGACAGATGGGCCATGCCATTCAGTTACAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCG > 6:311335/1‑148 CCGACTGGCGACAGATGGGCCATGCCATTCAGTTACAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAG > 2:352228/1‑149 ACAGATGGGCCATGCCATTCAGTTACAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAGGCCAGCACAT < 1:326663/149‑1 ATGGGCCATGCCATTCAGTTACAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAGGCCAGCACATTGTG < 5:239845/149‑1 GGCCATGCCATTCAGTTACAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAGGCCAGCACATTGTGCTT < 1:352228/149‑1 CAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAGGCCAGCACATTGTGCTTGTCACGGCACAGGGCGAT < 8:52458/149‑1 AGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAGGCCAGCACATTGTGCTTGTCACGGCACAGGGCGATG < 8:139412/149‑1 TAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAGGCCAGCACATTGTGCTTGTCACGGCACAGGGCGATGGCCTCC < 5:311335/149‑1 TACGCCGAAGACCCCTGCGGCGCCGAGAACGGTTACTCGGGCCGCGAGGTGATGGCCGAGTTCCGCCGCGCCACCGGGCTGCCCACCGCGACCAACATGATCGCTACCGACTGGCGACAGATGGGCCATGCCATTCAGTTACAGTCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5416903‑5416755‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtcggtAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAGGCCAGCACATTGTGCTTGTCACGGCACAGGGCGATGGCCTCC > NC_002947/5416799‑5416946 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |