New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5416755 =	46 (0.780)	7 (0.130)	6/240	NT	15.5%	coding (929/1347 nt)	gudD	bifunctional D‑glucarate dehydratase/L‑idarate epimerase
	?	NC_002947	5416799 =	33 (0.600)					coding (885/1347 nt)	gudD	bifunctional D‑glucarate dehydratase/L‑idarate epimerase

ATTGGAATGAGAACCCCAGGTCAGCCCCCAGTCGTTGCACATCTGCGCCACCCGAACCGAACCCTGCAAGGTCCAGAAGTGAGGGTCGGCCAGCGGAATGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAGGCCAGCACATTGTGCTTGTCACGGCACAGGGCGATGGCCTCC  >  NC_002947/5416652‑5416946                                                                                                                                                    |                                                                                                                                                    cgccgaagacccctgcggcgccgagaacggttactcgggccgcgaggtgatggccgagttccgccgcgccaccgggctgcccaccgcgaccaacatgatcgctACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTa                                                                                                                                                     >  2:326663‑M1/104‑148 (MQ=255) cgccgaagacccctgcggcgccgagaacggttactcgggccgcgaggtgatggccgagttccgccgcgccaccgggctgcccaccgcgaccaacatgatcgctACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTa                                                                                                                                                     >  6:311335‑M1/104‑148 (MQ=255)    ggAATGAGAACCCCAGGTCAGCCCCCAGTCGTTGCACATCTGCGCCACCCGAACCGAACCCTGCAAGGTCCAGAAGTGAGGGTCGGCCAGCGGAATGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCg                                                                                                                                                  <  7:86338/148‑1 (MQ=255)     gAATGAGAACCCCAGGTCAGCCCCCAGTCGTTGCACATCTGCGCCACCCGAACCGAACCCTGCAAGGTCCAGAAGTGAGGGTCGGCCAGCGGAATGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGa                                                                                                                                                 >  8:197945/1‑148 (MQ=255)     gAATGAGAACCCCAGGTCAGCCCCCAGTCGTTGCACATCTGCGCCACCCGAACCGAACCCTGCAAGGTCCAGAAGTGAGGGTCGGCCAGCGGAATGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGa                                                                                                                                                 <  3:210943/148‑1 (MQ=255)     gAATGAGAACCCCAGGTCAGCCCCCAGTCGTTGCACATCTGCGCCACCCGAACCGAACCCTGCAAGGTCCAGAAGTGAGGGTCGGCCAGCGGAATGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGAt                                                                                                                                                >  6:24973/1‑149 (MQ=255)       agacccctgcggcgccgagaacggttactcgggccgcgaggtgatggccgagttccgccgcgccaccgggctgcccaccgcgaccaacatgatcgctACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATc                                                                                                                                               >  6:239845‑M1/98‑148 (MQ=255)        tGAGAACCCCAGGTCAGCCCCCAGGCGTTGCACAGCTGCGCCACCCGAACCGAACCCTGCAAGGTCCAGAAGTGAGGGTCGGCCAGCGGAATGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATCAt                                                                                                                                             <  4:212709/149‑1 (MQ=255)          agaACCCCAGGTCAGCCCCCAGTCGTTGCACATCTGCGCCACCCGAACCGAACCCTGCAAGGTCCAGAAGTGAGGGTCGGCCAGCGGAATGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATCATGt                                                                                                                                           >  3:53871/1‑149 (MQ=255)               cccAGGTCAGCCCCCAGTCGTTGCACATCTGCGCCACCCGAACCGAACCCTGCAAGGTCCAGAAGTGAGGGTCGGCCAGCGGAATGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTc                                                                                                                                      >  5:8665/1‑149 (MQ=255)                 cAGGTCAGCCCCCAGTCGTTGCACATCTGCGCCACCCGAACCGAACCCTGCAAGGTCCAGAAGTGAGGGTCGGCTAGCGGAATGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTcgc                                                                                                                                    <  8:25668/149‑1 (MQ=255)                    gTCAGCCCCCAGTCGTTGCACATCTGCGCCACCCGAACCGAACCCTGCAAGGTCCAGAAGTGAGGGTCGGCCAGCGGAATGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTCGCgg                                                                                                                                  <  4:122460/148‑1 (MQ=255)                    gTCAGCCCCCAGTCGTTGCACATCTGCGCCACCCGAACCGAACCCTGCAAGGTCCAGAAGTGAGGGTCGGCCAGCGGAATGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTCGCGGt                                                                                                                                 <  7:197945/149‑1 (MQ=255)                       aGCCCCCAGTCGTTGCACATCTGCGCCACCCGAACCGAACCCTGCAAGGTCCAGAAGTGAGGGTCGGCCAGCGGAATGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTCGCGGt                                                                                                                                 <  5:55008/146‑1 (MQ=255)                       aGCCCCCAGTCGTTGCACATCTGCGCCACCCGAACCGAACCCTGCAAGGTCCAGAAGTGAGGGTCGGCCAGCGGAATGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTCGCGGt                                                                                                                                 >  6:55008/1‑146 (MQ=255)                       aGCCCCCAGTCGTTGCACATCTGCGCCACCCGAACCGAACCCTGCAAGGTCCAGAAGTGAGGGTCGGCCAGCGGAATGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTCGCGGTg                                                                                                                                <  3:260803/147‑1 (MQ=255)                       aGCCCCCAGTCGTTGCACATCTGCGCCACCCGAACCGAACCCTGCAAGGTCCAGAAGTGAGGGTCGGCCAGCGGAATGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTCGCGGTg                                                                                                                                >  4:260803/1‑147 (MQ=255)                       aGCCCCCAGGCGTTCCACATCTGCGCCACCCGAACCGAACCCTGCAAGGGCCAGAAGTCAGGGTCGGCCAGCGGAATGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGGCGGTAGCGATCATGTTGTTCGCGGTgg                                                                                                                               <  2:255415/148‑1 (MQ=255)                              aGTCGTTGCACATCTGCGCCACCCGAACCGAACCCTGCAAGGTCCAGAAGTGAGGGTCGGCCAGCGGAATGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCg                                                                                                                       >  7:36850/1‑149 (MQ=255)                                  gTTGCACATCTGCGCCACCCGAACCGAACCCTGCAAGGTCCAGAAGTGAGGGTCGGCCAGCGGAATGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTgg                                                                                                                   <  4:53871/149‑1 (MQ=255)                                        caTCTGCGCCACCCGAACCGAACCCTGCAAGGTCCAGAAGTGAGGGTCGGCCAGCGGAATGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCgcggc                                                                                                             <  4:344852/149‑1 (MQ=255)                                        caTCTGCGCCACCCGAACCGAACCCTGCAAGGTCCAGAAGTGAGGGTCGGCCAGCGGAATGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCgcggc                                                                                                             <  6:310175/149‑1 (MQ=255)                                         aTCTGCGCCACCCGAACCGAACCCTGCAAGGTCCAGAAGTGAGGGTCGGCCAGCGGAATGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCgcggcg                                                                                                            >  1:317759/1‑149 (MQ=255)                                               gcCACCCGAACCGAACCCTGCAAGGTCCAGAAGTGAGGGTCGGCCAGCGGAATGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTc                                                                                                      >  5:41154/1‑149 (MQ=255)                                                 cACCCGAACCGAACCCTGCAAGGTCCAGAAGTGAGGGTCGGCCAGCGGAATGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCgg                                                                                                    >  5:314161/1‑149 (MQ=255)                                                    ccgaaccgaaCCCTGCAAGGTCCAGAAGTGAGGGTCGGCCAGCGGAATGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGcc                                                                                                  >  3:112235/1‑148 (MQ=255)                                                             accCTGCAAGGTCCAGAAGTGAGGGTCGGCCAGCGGAATGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTcgc                                                                                        <  5:24973/149‑1 (MQ=255)                                                                   cAAGGTCCAGAAGTGAGGGTCGGCCAGCGGAATGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGccc                                                                                   <  6:314161/148‑1 (MQ=255)                                                                         ccAGAAGTGAGGGTCGGCCAGCGGAATGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGccc                                                                                   <  6:196160/142‑1 (MQ=255)                                                                         ccAGAAGTGAGGGTCGGCCAGCGGAATGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGccc                                                                                   >  5:196160/1‑142 (MQ=255)                                                                                  aGGGTCGGCCAGCGGAATGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCgg                                                                   >  7:52458/1‑149 (MQ=255)                                                                                                gAATGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGGGTAACCGTTCTCGGCGCCGCAGGGGTCt                                                     >  3:210175/1‑149 (MQ=255)                                                                                                 gatcgctaccgactggcgacagatgggccatgccattcagttacagtcggtAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCt                                                     >  6:239845‑M2/52‑148 (MQ=255)                                                                                                 aaTGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCtt                                                    <  4:112235/149‑1 (MQ=255)                                                                                                   tGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCg                                                  <  6:41154/149‑1 (MQ=255)                                                                                                       taccgactggcgacagatgggccatgccattcagttacagtcggtAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCg                                               >  6:311335‑M2/46‑148 (MQ=255)                                                                                                       taccgactggcgacagatgggccatgccattcagttacagtcggtAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCg                                               >  2:326663‑M2/46‑148 (MQ=255)                                                                                                       cACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCg                                               >  5:142705/1‑148 (MQ=255)                                                                                                        ACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTa                                             >  8:36850‑M1/1‑149 (MQ=255)                                                                                                         ccgactggcgacagatgggccatgccattcagttacagtcggtAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAg                                            >  2:352228‑M2/44‑149 (MQ=255)                                                                                                                tAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAGGCCAGca                                     >  7:139412/1‑149 (MQ=255)                                                                                                                   acagatgggccatgccattcagttacagtcggtAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAGGCCAGCACAt                                  <  1:326663‑M2/116‑1 (MQ=255)                                                                                                                       atgggccatgccattcagttacagtcggtAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAGGCCAGCACATtgtg                              <  5:239845‑M2/120‑1 (MQ=255)                                                                                                                       atggcatggcCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAGGCCAGCACATtgtg                              <  2:317759/149‑1 (MQ=255)                                                                                                                          ggccatgccattcagttacagtcggtAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAGGCCAGCACATTGTGCtt                           <  1:352228‑M2/123‑1 (MQ=255)                                                                                                                          gcatggcCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTa                                             <  6:47521/131‑1 (MQ=255)                                                                                                                          gcatggcCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTa                                             >  5:47521/1‑131 (MQ=255)                                                                                                                                        tCGCCAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAGGCCAGCACATTGTGCTTGTCACGGCACAgg              <  4:286773/148‑1 (MQ=255)                                                                                                                                          gCCAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAGGCCAGCACATTGTGCTTGTCACGGCACAGGGc            >  7:285179/1‑148 (MQ=255)                                                                                                                                            cagtcggtAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAGGCCAGCACATTGTGCTTGTCACGGCACAGGGCGAt         <  8:52458‑M2/141‑1 (MQ=255)                                                                                                                                             agtcggtAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAGGCCAGCACATTGTGCTTGTCACGGCACAGGGCGATg        <  8:139412‑M2/142‑1 (MQ=255)                                                                                                                                                   tAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAGGCCAGCACATTGTGCTTGTCACGGCACAGGGCGATGGcctcc  <  5:311335‑M2/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    ATTGGAATGAGAACCCCAGGTCAGCCCCCAGTCGTTGCACATCTGCGCCACCCGAACCGAACCCTGCAAGGTCCAGAAGTGAGGGTCGGCCAGCGGAATGTCCACCGACTGTAACTGAATGGCATGGCCCATCTGTCGCCAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAGGCCAGCACATTGTGCTTGTCACGGCACAGGGCGATGGCCTCC  >  NC_002947/5416652‑5416946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.