| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5443506 = | 78 (1.320) | 4 (0.070) | 4/236 | NT | 5.3% | coding (1274/1989 nt) | PP_4781 | sensor histidine kinase |
| ? | NC_002947 | 5443547 = | 72 (1.320) | coding (1233/1989 nt) | PP_4781 | sensor histidine kinase | |||||
GCCTTGGAAGTGGCCTTGCTGTCGCTGGCACTGGCCGACCGCATCAACAGCCTGCGCGAGCAGCAGGCACAGACCTTGCGCGACACTGGGCGTACGCTGGAGCAACTGAACCTGCAACTGGCCAGGAGCAATCGCCTGAAGGACGAGTTCCTGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5443663‑5443506‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcctggccagTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGCTGGCTGGCATACATGGTGATG > NC_002947/5443547‑5443694 GCCTTGGAAGTGGCCTTGCTGTCGCTGGCACTGGCCGACCGCATCAACAGCCTGCGCGAGCAGCAGGCACAGACCTTGCGCGACACTGGGCGTACGCTGGAGCAACTGAACCTGCAACTGGCCAGGAGCAATCGCCTGAAGGACGAGTT > 7:74426/1‑149GCCTTGGAAGTGGCCTTGCTGTCGCTGGCACTGGCCGACCGCATCAACAGCCTGCGCGAGCAGCAGGCACAGACCTTGCGCGACACTGGGCGTACGCTGGAGCAACTGAACCTGCAACTGGCCAGGAGCAATCGCCTGAAGGACGAGTT > 1:43840/1‑149 GGAAGTGGCCTTGCTGTCGCTGGCACTGGCCGACCGCATCAACAGCCTGCGCGAGCAGCAGGCACAGACCTTGCGCGACACTGGGCGTACGCTGGAGCAACTGAACCTGCAACTGGCCAGGAGCAATCGCCTGAAGGACGAGTTCCTGG > 3:62234/1‑149 GGAAGTGGCCTTGCTGTCGCTGGCACTGGCCGACCGCATCAACAGCCTGCGCGAGCAGCAGGCACAGACCTTGCGCGACACTGGGCGTACGCTGGAGCAACTGAACCTGCAACTGGCCAGGAGCAATCGCCTGAAGGACGAGTTCCTGG > 1:371371/1‑149 GGAAGTGGCCTTGCTGTCGCTGGCACTGGCCGACCGCATCAACAGCCTGCGCGAGCAGCAGGCACAGACCTTGCGCGACACTGGGCGTACGCTGGAGCAACTGAACCTGCAACTGGCCAGGAGCAATCGCCTGAAGGACGAGTTCCTG < 4:300312/148‑1 GGAAGTGGCCTTGCTGTCGCTGGCACTGGCCGACCGCATCAACAACCTGCGCGAGCAGCAGGCACAGACCTTGCGCGACACTGGGCGTACGCTGGAGCAACTGAACCTGCAACTGGCCAGGAGCAATCGCCTGAAGGACGAGTTCCTG < 2:14474/148‑1 CTGGCCAGGAGCAATCGCCTGAAGGACGAGTTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGAC < 3:195070/138‑1 CTGGCCAGGAGCAATCGCCTGAAGGACGAGTTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGATGATGCCGTCGCCCAGTGCCAGCGAC > 4:195070/1‑138 TGGCCAGGAGCAATCGCCTGAAGGACGAGTTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACT > 5:176641/1‑149 GCCAGGAGCAATCGCCTGAAGGACGAGTTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTC > 4:52443/1‑149 TCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGCTGGCTGGCATA > 4:185320/1‑148 GCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGCTGGCTGGCATACATGGT < 3:300312/149‑1 CAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGCTGGCTGGCATACATGGTGA < 6:176641/149‑1 AGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGCTGGCTGGCATACATGGTGAT > 2:163129/1‑149 AGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGCTGGCTGGCATACATGGTGAT < 1:163129/149‑1 AGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGCTGGCTGGCATACATGGTGAT < 1:229077/149‑1 GTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGCTGGCTGGCATACATGGTGATG < 1:66363/149‑1 GTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTACAAGGCCGAACCCAGCTGGCTGGCATACATGGTGATG < 5:386364/149‑1 GCCTTGGAAGTGGCCTTGCTGTCGCTGGCACTGGCCGACCGCATCAACAGCCTGCGCGAGCAGCAGGCACAGACCTTGCGCGACACTGGGCGTACGCTGGAGCAACTGAACCTGCAACTGGCCAGGAGCAATCGCCTGAAGGACGAGTTCCTGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5443663‑5443506‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcctggccagTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGCTGGCTGGCATACATGGTGATG > NC_002947/5443547‑5443694 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |