New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5443506 =	78 (1.320)	4 (0.070)	4/236	NT	5.3%	coding (1274/1989 nt)	PP_4781	sensor histidine kinase
	?	NC_002947	5443547 =	72 (1.320)					coding (1233/1989 nt)	PP_4781	sensor histidine kinase

AGCCGTGTGATGGTACTGAGCCATTTCAGCCCCCATCGGCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGCTGGCTGGCATACATGGTGATG  >  NC_002947/5443400‑5443694                                                                                                                                                      |                                                                                                                                                    aGCCGTGTGATGGTACTGAGCCATTTCAGCCCCCATCGGCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGtt                                                                                                                                                    >  2:66363/1‑149 (MQ=255)    cGTGTGATGGTACTGAGCCATTTCAGCCCCCATCGGCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTg                                                                                                                                                   >  8:7815/1‑147 (MQ=255)    cGTGTGATGGTACTGAGCCATTTCAGCCCCCATCGGCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTg                                                                                                                                                   >  8:2226/1‑147 (MQ=255)     gtgtGATGGTACTGAGCCATTTCAGCCCCCATCGGCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAg                                                                                                                                                <  6:319096/149‑1 (MQ=255)           tGGTACTGAGCCATTTCAGCCCCCATCGGCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAg                                                                                                                                          <  1:243333/149‑1 (MQ=255)            ggTACTGAGCCATTTCAGCCCCCATCGACAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGt                                                                                                                                         >  6:42012/1‑149 (MQ=255)              tACTGAGCCATTTCAGCCCCCATCGGCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTg                                                                                                                                       >  7:140698/1‑149 (MQ=255)                  gAGCCATTTCAGCCCCCATCGGCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTc                                                                                                                                    >  4:295995/1‑148 (MQ=255)                   aGCCATTTCAGCCCCCATCGGCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTc                                                                                                                                    <  5:17900/147‑1 (MQ=255)                   aGCCATTTCAGCCCCCATCGGCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTc                                                                                                                                    <  5:372577/147‑1 (MQ=255)                       aTTTCAGCCCCCATCGGCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCg                                                                                                                               >  8:358915/1‑148 (MQ=255)                          tCAGCCCCCATCGGCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGGATTCCGCGGGTATTGAGTCCCGCTGGCAAGGAAATGGTCGTACAGGCGATTGCACCTGGCCATTTGCAGGTTCTTTTGGACCAGCTTa                                                                                                                             >  1:108711/1‑149 (MQ=255)                           cAGCCCCCATCGGCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGc                                                                                                                          >  3:286308/1‑149 (MQ=255)                               ccccATCGGCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAg                                                                                                                      >  2:43840/1‑149 (MQ=255)                                  cATCGGCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAgtgt                                                                                                                   >  1:158632/1‑149 (MQ=255)                                       gCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGcc                                                                                                                         >  8:221226/1‑138 (MQ=255)                                       gCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGcc                                                                                                                         <  7:221226/138‑1 (MQ=255)                                       gCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTcgcg                                                                                                               >  5:63494/1‑148 (MQ=255)                                               tgCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCt                                                                                                       <  2:158632/148‑1 (MQ=255)                                                 cATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCtgtg                                                                                                    <  3:295995/149‑1 (MQ=255)                                                 cATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCtgt                                                                                                     <  7:358915/148‑1 (MQ=255)                                                   tCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAg                                                                                                                      <  8:362885/129‑1 (MQ=255)                                                   tCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGcc                                                                                                  <  2:108711/149‑1 (MQ=255)                                                       cTCGAGCGAGCCAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCctgct                                                                                              >  5:96864/1‑149 (MQ=255)                                                       cTCGAGCGAGCCAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCctgct                                                                                              >  5:43857/1‑149 (MQ=255)                                                               agcCAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAgtg                                                                                                                    <  6:315571/119‑1 (MQ=255)                                                               agcCAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAgtg                                                                                                                    >  5:315571/1‑119 (MQ=255)                                                               agcCAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCAcgcg                                                                                       >  3:77971/1‑148 (MQ=255)                                                               agcCAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGGCGCGCAAGGTCTGTGCCTGCTGCTCgcgc                                                                                      <  4:77449/149‑1 (MQ=255)                                                                gcCAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTcgcg                                                                                       >  2:371371/1‑147 (MQ=255)                                                                 ccAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAg                                                                                    >  1:187684/1‑149 (MQ=255)                                                                  cAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGATCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAgg                                                                                   >  5:203055/1‑149 (MQ=255)                                                                        cTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTg                                                                             <  2:342013/149‑1 (MQ=255)                                                                         tCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGa                                                                            >  8:74426/1‑149 (MQ=255)                                                                         tCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGa                                                                            >  7:355147/1‑149 (MQ=255)                                                                           cGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGa                                                                            <  4:286308/147‑1 (MQ=255)                                                                           cGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGAt                                                                           <  4:158925/148‑1 (MQ=255)                                                                            gTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGc                                                                         >  1:177949/1‑149 (MQ=255)                                                                             ttCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCg                                                                        <  6:96864/149‑1 (MQ=255)                                                                                aTCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTc                                                                     >  4:62234/1‑149 (MQ=255)                                                                                   gggg‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGc                                                                  <  2:177949/149‑1 (MQ=255)                                                                                    ggg‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGAt                                                                           >  1:68963/1‑139 (MQ=255)                                                                                    ggg‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGAt                                                                           <  2:68963/139‑1 (MQ=255)                                                                                    ggg‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGc                                                                  >  2:180727/1‑148 (MQ=255)                                                                                            gCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGc                                                                         <  2:147048/135‑1 (MQ=255)                                                                                            gCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGc                                                                         >  1:147048/1‑135 (MQ=255)                                                                                            gCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGcc                                                           >  8:263965/1‑149 (MQ=255)                                                                                               gCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGc                                                        >  5:134092/1‑149 (MQ=255)                                                                                               gCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGc                                                        >  6:300708/1‑149 (MQ=255)                                                                                               gCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGc                                                        <  6:43857/149‑1 (MQ=255)                                                                                                   aTGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCTGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCa                                                          <  5:148687/143‑1 (MQ=255)                                                                                                   aTGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCa                                                          >  6:148687/1‑143 (MQ=255)                                                                                                   aTGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGa                                                      >  6:59638/1‑147 (MQ=255)                                                                                                   aTGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGa                                                      >  6:386364/1‑147 (MQ=255)                                                                                                   aTGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGGCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACa                                                    <  8:140698/149‑1 (MQ=255)                                                                                                       gTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCaa                                                <  6:63494/149‑1 (MQ=255)                                                                                                       gTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCaa                                                <  1:180727/149‑1 (MQ=255)                                                                                                          aCGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAgg                                              <  7:7815/148‑1 (MQ=255)                                                                                                          aCGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAgg                                              <  7:2226/148‑1 (MQ=255)                                                                                                            gCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCa                                           <  5:59638/149‑1 (MQ=255)                                                                                                             ctggccaggagcaatcgcctgaaggacgagttcctggccagTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGAc                                                     <  3:195070‑M2/97‑1 (MQ=255)                                                                                                             ctggccaggagcaatcgcctgaaggacgagttcctggccagTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGATGATGCCGTCGCCCAGTGCCAGCGAc                                                     >  4:195070‑M2/42‑138 (MQ=255)                                                                                                              tggccaggagcaatcgcctgaaggacgagttcctggccagTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACt                                         >  5:176641‑M2/41‑149 (MQ=255)                                                                                                                gccaggagcaatcgcctgaaggacgagttcctggccagTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTc                                       >  4:52443‑M2/39‑149 (MQ=255)                                                                                                                 CCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTcc                                      >  1:371371‑M1/1‑149 (MQ=255)                                                                                                                 CCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTcc                                      >  3:62234‑M1/1‑149 (MQ=255)                                                                                                                  CAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGTTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTcc                                      <  2:14474‑M1/148‑1 (MQ=255)                                                                                                                  CAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTcc                                      <  4:300312‑M1/148‑1 (MQ=255)                                                                                                                      AACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGc                                 >  1:43840‑M1/1‑149 (MQ=255)                                                                                                                      AACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGc                                 >  7:74426‑M1/1‑149 (MQ=255)                                                                                                                           gTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAAc                            >  4:99517/1‑149 (MQ=255)                                                                                                                           gTCCTTCAGGCGATCGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGc                                                  >  6:155542/1‑127 (MQ=255)                                                                                                                           gTCCTTCAGGCGATCGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGc                                                  <  5:155542/127‑1 (MQ=255)                                                                                                                            tCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAAcc                           >  2:74260/1‑149 (MQ=255)                                                                                                                            tCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAAcc                           >  4:135138/1‑149 (MQ=255)                                                                                                                               ttCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAg                        >  1:132404/1‑149 (MQ=255)                                                                                                                               ttCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTACCAAGGCCGAACCCAg                        >  5:271016/1‑149 (MQ=255)                                                                                                                                tCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCGGTGTCGCGCAATGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGaa                             <  5:271301/143‑1 (MQ=255)                                                                                                                                tCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCGGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCTACAGCAAGGCCACTTCCAAGGCCGaa                             >  6:271301/1‑143 (MQ=255)                                                                                                                                   ggCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGTTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAgctgg                    <  1:14474/149‑1 (MQ=255)                                                                                                                                   ggCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAgctgg                    >  5:151186/1‑149 (MQ=255)                                                                                                                                    gCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTATGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAg                        <  7:125653/144‑1 (MQ=255)                                                                                                                                    gCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTATGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAg                        >  8:125653/1‑144 (MQ=255)                                                                                                                                      gATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAgctggctg                 <  6:151186/149‑1 (MQ=255)                                                                                                                                      gATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAgctggctg                 >  4:167093/1‑149 (MQ=255)                                                                                                                                       aTTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGctggctgg                <  7:263965/149‑1 (MQ=255)                                                                                                                                          gCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGCTGGCTGGCa              <  6:134092/148‑1 (MQ=255)                                                                                                                                            tcctggccagTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGCTGGCTGGCATa            >  4:185320‑M2/11‑148 (MQ=255)                                                                                                                                                 gccagTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGCTGGCTGGCATACATGGt      <  3:300312‑M2/144‑1 (MQ=255)                                                                                                                                                   cagTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGCTGGCTGGCATACATGGtga    <  6:176641‑M2/146‑1 (MQ=255)                                                                                                                                                    agTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGCTGGCTGGCATACATGGtgat   <  1:229077‑M2/147‑1 (MQ=255)                                                                                                                                                    agTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGCTGGCTGGCATACATGGtgat   >  2:163129‑M2/3‑149 (MQ=255)                                                                                                                                                    agTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGCTGGCTGGCATACATGGtgat   <  1:163129‑M2/147‑1 (MQ=255)                                                                                                                                                     gTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGCTGGCTGGCATACATGGtgatg  <  1:66363‑M2/148‑1 (MQ=255)                                                                                                                                                     gTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTACAAGGCCGAACCCAGCTGGCTGGCATACATGGtgatg  <  5:386364‑M2/148‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                    AGCCGTGTGATGGTACTGAGCCATTTCAGCCCCCATCGGCAGGGTGTGCATCAGCTCGAGCGAGCCAATCACTCCGTTCATCGGGG‑‑TACGCAGCTCATGAGTCACGCTGGCCAGGAACTCGTCCTTCAGGCGATTGCTCCTGGCCAGTTGCAGGTTCAGTTGCTCCAGCGTACGCCCAGTGTCGCGCAAGGTCTGTGCCTGCTGCTCGCGCAGGCTGTTGATGCGGTCGGCCAGTGCCAGCGACAGCAAGGCCACTTCCAAGGCCGAACCCAGCTGGCTGGCATACATGGTGATG  >  NC_002947/5443400‑5443694

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.