| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5902127 = | 55 (0.930) | 3 (0.050) | 3/240 | NT | 5.8% | coding (910/1089 nt) | PP_5175 | HlyD family secretion protein |
| ? | NC_002947 | 5902217 = | 46 (0.830) | coding (820/1089 nt) | PP_5175 | HlyD family secretion protein | |||||
CGTACAGGTCAAGGTAGGGCTCAAGGACGTGCCGCCCGGGATGCAGTTGGGGGCACCGGTTACTGCCACCACCAACGCCCAGGGCCGGCCCAGCATCGAGCTGCCATGGTCGGCACTGACCAAGGCCTTGCATGAGCCTGCCGTGTGGGTGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5902281‑5902127‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggtggCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCGCTTTGCGCCGACACCGTGGGGGTGATTTCACGTACGAAGCCATGGGCCTGGACCTTGGGATCGTCCAGCAGGCTCAC > NC_002947/5902217‑5902364 CGTACAGGTCAAGGTAGGGCTCAAGGACGTGCCGCCCGGGATGCAGTTGGGGGCACCGGTTACTGCCACCACCAACGCCCAGGGCCGGCCCAGCATCGAGCTGCCATGGTCGGCACTGACCAAGGCCTTGCATGAGCCTGCCGTGTGGG > 2:372407/1‑149 CAGGTCAAGGTAGGGCTCAAGGACGTGCCGCCCGGGATGTAGTTGGGGGCACCGGTTACTGCCACCACCAACGCCCAGGGCCGGCCCAGCATCGAGCTGCCATGGTCGGCACTGACCAAGGCCTTGCATGAGCCTGCCGTGTGGGTGG < 6:350901/148‑1 CCACCACCAACGCCCAGGGCCGGCCCAGCATCGAGCTGCCATGGTCGGCACTGACCAAGGCCTTGCATGAGCCTGCCGTGTGGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACC > 8:358568/1‑149 CACCACCAACGCCCAGGGCCGGCCCAGCATCGAGCTGCCATGGTCGGCACTGACCAAGGCCTTGCATGAGCCTGCCGTGTGGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCT > 4:110019/1‑149 CCCAGGGCCGGCCCAGCATCGAGCTGCCATGGTCGGCACTGACCAAGGCCTTGCATGAGCCTGCCGTGTGGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCG < 7:358568/149‑1 GGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCGCTTTGCGCCGACACCGTGGGGGTGATTTCACGTACGAAGCCATGGGCCTGGACCTTGGGATCGTCCAGC < 7:142576/148‑1 TGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCGCTTTGCGCCGACACCGTGGGGGTGATTTCACGTACGAAGCCATGGGCCTGGACCTTGGGATCGTCCAGCAGG < 4:308913/149‑1 GCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCGCTTTGCGCCGACACCGTGGGGGTGATTTCACGTACGAAGCCATGGGCCTGGACCTTGGGATCGTCCAGCAGGCTCAC > 1:177669/1‑149 CGTACAGGTCAAGGTAGGGCTCAAGGACGTGCCGCCCGGGATGCAGTTGGGGGCACCGGTTACTGCCACCACCAACGCCCAGGGCCGGCCCAGCATCGAGCTGCCATGGTCGGCACTGACCAAGGCCTTGCATGAGCCTGCCGTGTGGGTGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5902281‑5902127‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggtggCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCGCTTTGCGCCGACACCGTGGGGGTGATTTCACGTACGAAGCCATGGGCCTGGACCTTGGGATCGTCCAGCAGGCTCAC > NC_002947/5902217‑5902364 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |