New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5902127 =	55 (0.930)	3 (0.050)	3/240	NT	5.8%	coding (910/1089 nt)	PP_5175	HlyD family secretion protein
	?	NC_002947	5902217 =	46 (0.830)					coding (820/1089 nt)	PP_5175	HlyD family secretion protein

GTAACGGCGGATTTCGACCTTGCGCAGTTCCACCTTGTCGCCCTCGCCCACCACCCACACGGCAGGCTCATGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCGCTTTGCGCCGACACCGTGGGGGTGATTTCACGTACGAAGCCATGGGCCTGGACCTTGGGATCGTCCAGCAGGCTCAC  >  NC_002947/5902080‑5902364                                                                                                                                           |                                                                                                                                                    gTAACGGCGGATTTCGACCTTGCGCAGTTCCACCTTTTCGCCCTCGGCGACCACCCACACGGCAGGCTCATGCAAGGCCTTTGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTTGGCGTTGGTGGTGGCAGTAACCGGTg                                                                                                                                          <  8:211867/149‑1 (MQ=255) gTAACGGCGGATTTCGACCTTGCGCAGTTCCACCTTGTCGCCCTCGCCCACCACCCACACGGCAGGCTCATGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTg                                                                                                                                          >  1:372407/1‑149 (MQ=255)  tAACGGCGGATTTCGACCTTGCGCAGTTCCACCTTGTCGCCCTCGCCCACCACCCACACGGCAGGCTCATGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGc                                                                                                                                         >  3:320341/1‑149 (MQ=255)        cggATTTCGACCTTGCGCAGTTCCACCTTGTCGCCCTCGCCCACCACCCACACGGCAGGCTCATGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCaa                                                                                                                                   <  6:311915/149‑1 (MQ=255)         ggATTTCGACCTTGCGCAGTTCCACCTTGTCGCCCTCGCCCACCACCCACACGGCAGGCTCATGCAAGGCCTTGGTCAGTACCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAAc                                                                                                                                  <  3:136309/149‑1 (MQ=255)               cGACCTTGCGCAGTTCCACCTTGTCGCCCTCGCCCACCACCCACACGGCAGGCTCATGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCAt                                                                                                                             <  4:68660/148‑1 (MQ=255)                 aCCTTGCGCAGTTCCACCTTGTCGCCCTCGCCCACCACCCACACGGCAGGCTCATGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGGAGTAACCGTTGCCCCCAGCTGcttgcc                                                                                                                          >  8:142576/1‑144 (MQ=255)                   cTTGCGCAGTTCCACCTTGTCGCCCTCGCCCACCACCCACACGGCAGGCTCATGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCgg                                                                                                                        >  7:13756/1‑149 (MQ=255)                      gcgcAGTTCCACCTTGTCGCCCTCGCCCACCACCCACACGGCAGGCTCATGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGggcg                                                                                                                     >  1:24692/1‑149 (MQ=255)                          aGTTCCACCTTGTCGCCCTCGCCCACCACCCACACGGCAGGCTCATGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCAc                                                                                                                 >  7:308408/1‑149 (MQ=255)                            ttCCACCTTGTCGCCCTCGCCCACCACCCACACGGCAGGCTCATGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGccccc                                                                                                                                     <  3:56629/127‑1 (MQ=255)                            ttCCACCTTGTCGCCCTCGCCCACCACCCACACGGCAGGCTCATGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGccccc                                                                                                                                     >  4:56629/1‑127 (MQ=255)                                 ccTTGTCGCCCTCGCCCACCACCCACACGGCAGGCTCATGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCtt                                                                                                           >  6:151096/1‑148 (MQ=255)                                     gTCGCCCTCGCCCACCACCCACCCGGCAGGCTCATGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATTCCGGGCGGCACGTCCTTGAGc                                                                                                       <  6:301599/148‑1 (MQ=255)                                     gTCGCCCTCGCCCACCACCCACACGGCAGGCTCATGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGcc                                                                                                      >  2:57656/1‑149 (MQ=255)                                     gTCGCCCTCGCCCACCACCCACACGGCAGGCTCATGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGc                                                                                                       <  5:286819/148‑1 (MQ=255)                                      tcgccctcgcccACCACCCACACGGCAGGCTCATGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGccc                                                                                                     <  1:57656/149‑1 (MQ=255)                                        gccctcgcccACCACCCACACGGCAGGCTCATGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCtt                                                                                                           <  3:212271/141‑1 (MQ=255)                                        gccctcgcccACCACCCACACGGCAGGCTCATGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCtt                                                                                                           >  4:212271/1‑141 (MQ=255)                                        gccctcgcccACCACCCACACGGCAGGCTCATGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCt                                                                                                    <  2:24692/148‑1 (MQ=255)                                            tcgcccACCACCCACACGGCAGGCTCATGCAAGGCCTTGCTCAGTGCCCACCATGGCAGCACCAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCtt                                                                                               >  5:76994/1‑149 (MQ=255)                                              gcccACCACCCACACGGCAGGCTCATGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGa                                                                                             >  6:24918/1‑149 (MQ=255)                                               cccACCACCCACACGGCAGGCTCATGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGAc                                                                                            <  1:223128/149‑1 (MQ=255)                                                 ccaccaccaacgcccagggccggcccagcatcgagctgccatggtcggcactgaccaaggccttgcatgagcctgccgtgtgggtggtggCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGAcc                                                                                           >  8:358568‑M2/91‑149 (MQ=255)                                                  caccaccaacgcccagggccggcccagcatcgagctgccatggtcggcactgaccaaggccttgcatgagcctgccgtgtgggtggtggCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCt                                                                                          >  4:110019‑M2/90‑149 (MQ=255)                                                   CCACCCACACGGCAGGCTCATGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTACATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTg                                                                                         <  6:350901‑M1/148‑1 (MQ=255)                                                      CCCACACGGCAGGCTCATGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACg                                                                                     >  2:372407‑M1/1‑149 (MQ=255)                                                             cccagggccggcccagcatcgagctgccatggtcggcactgaccaaggccttgcatgagcctgccgtgtgggtggtggCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCg                                                                               <  7:358568‑M2/71‑1 (MQ=255)                                                                aGGCTCATGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCGCttt                                                                           <  4:320341/149‑1 (MQ=255)                                                                  gCTCATGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCGCTTTg                                                                          >  1:105173/1‑148 (MQ=255)                                                                  gCTCATGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCGCTTTg                                                                          <  2:105173/148‑1 (MQ=255)                                                                   cTCATGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCGCTTTgcg                                                                        >  2:294137/1‑149 (MQ=255)                                                                   cTCATGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCGCTTTgcg                                                                        <  2:19002/149‑1 (MQ=255)                                                                      aTGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCGCTTTGCGcc                                                                      >  5:122650/1‑148 (MQ=255)                                                                       tGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCGCTTTgcgc                                                                       <  3:45219/146‑1 (MQ=255)                                                                       tGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCATACCTTGACCTGTACGGTGCCGCTTTgcgc                                                                       >  4:45219/1‑146 (MQ=255)                                                                        gCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGATCGCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCGCt                                                                             >  1:68048/1‑140 (MQ=255)                                                                        gCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCGCt                                                                             <  2:68048/139‑1 (MQ=255)                                                                         cAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCGCTTTGCGCCGaca                                                                  <  8:79025/149‑1 (MQ=255)                                                                                 tGGTCAGTGCAGACCATGGCAGATCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCGTTGAGCCCTACCTTGACCTGTACGGTGCCGCTTTGCGCCGACACCGTggg                                                           <  6:76994/148‑1 (MQ=255)                                                                                   gTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCGCTTTGCGCCGACACCGTGGGGGt                                                        >  7:360461/1‑149 (MQ=255)                                                                                            gACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCGCTTTGCGCCGACACCGTGGGGGTGATTTCACg                                               >  6:282081/1‑149 (MQ=255)                                                                                              ccATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCGCTTTGCGCCGACACCGTGGGGGTGATTTCACGTa                                             >  2:329235/1‑149 (MQ=255)                                                                                                 tGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCGCTTTGCGCCGACACCGTGGGGGTGATTTCACGTACGa                                          <  6:122650/149‑1 (MQ=255)                                                                                                       cTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCGCTTTGCGCCGACACCGTGGGGGTGATTTCACGTACGAAGCCAt                                    >  7:329058/1‑149 (MQ=255)                                                                                                               cTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCGCTTTGCGCCGACACCGTGGGGGTGATTTCACGTACGAAGCCATGGGCCTg                             <  2:349547/149‑1 (MQ=255)                                                                                                               cTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCACTACCTTGACCTGTACGGTGCCGCTTTGCGCCGACACCGTGGGGGTGATTTCACGTACGAAGCCATGGGCCt                              <  5:151096/148‑1 (MQ=255)                                                                                                               cTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCACCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCGCTTTGCGCCGACACCGTGGGGGTGATTTCACGTACGAAGCCATGGGCCt                              <  5:368873/148‑1 (MQ=255)                                                                                                                   gccggccCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCGCTTTGCGCCGACACCGTGGGGGTGATTTCACGTACGAAGCCATGGGCCTGGAcc                         >  3:308913/1‑149 (MQ=255)                                                                                                                      ggccCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTACATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCGCTTTGCGCCGACACCGTGGGGGTGATTTCACGTACGAAGCCATGGGCCTGGACCTTg                      <  5:350901/149‑1 (MQ=255)                                                                                                                        cccTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCGCTTTGCGCCGACACCGTGGGGGTGATTTCACGTACGAAGCCATGGGCCTGGACCTTggg                    <  8:308408/149‑1 (MQ=255)                                                                                                                                gTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCGCTTTGCGCCGACACCGTGGGGGTGATTTCACGTACGAAGCCATGGGCCTGGACCTTGGGATCGTCca            <  4:95037/149‑1 (MQ=255)                                                                                                                                   ggtggtggCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCGCTTTGCGCCGACACCGTGGGGGTGATTTCACGTACGAAGCCATGGGCCTGGACCTTGGGATCGTCcagc          <  7:142576‑M2/140‑1 (MQ=255)                                                                                                                                     tggtggCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCGCTTTGCGCCGACACCGTGGGGGTGATTTCACGTACGAAGCCATGGGCCTGGACCTTGGGATCGTCCAGCAgg       <  4:308913‑M2/143‑1 (MQ=255)                                                                                                                                          gCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCGCTTTGCGCCGACACCGTGGGGGTGATTTCACGTACGAAGCCATGGGCCTGGACCTTGGGATCGTCCAGCAGGCTCAc  >  1:177669‑M2/2‑149 (MQ=255)                                                                                                                                           |                                                                                                                                                    GTAACGGCGGATTTCGACCTTGCGCAGTTCCACCTTGTCGCCCTCGCCCACCACCCACACGGCAGGCTCATGCAAGGCCTTGGTCAGTGCCGACCATGGCAGCTCGAT‑GCTGGGCCGGCCCTGGGCGTTGGTGGTGGCAGTAACCGGTGCCCCCAACTGCATCCCGGGCGGCACGTCCTTGAGCCCTACCTTGACCTGTACGGTGCCGCTTTGCGCCGACACCGTGGGGGTGATTTCACGTACGAAGCCATGGGCCTGGACCTTGGGATCGTCCAGCAGGCTCAC  >  NC_002947/5902080‑5902364

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.