New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 811460	44 (0.740)	3 (0.050)	3/244	NT	6.1%	coding (792/918 nt)	PP_0698	LysR family transcriptional regulator
	?	NC_002947	= 811486	51 (0.910)					coding (766/918 nt)	PP_0698	LysR family transcriptional regulator

ATCCATTTGGATACCGCCGGTTATCGCACCTGGGGTGGTGATGGCGGTGCGGGGGCGTCGTTCTGTATCAACCCCAAATGAGCCAGGCACTTCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGGCGCTGGCGGCCTGAATCGAC  >  NC_002947/811314‑811607                                                                                                                                                    |                                                                                                                                                    agccctttGGTTACCGCAGGTTATCGCAGCTGGGTGGGTGATGGTGGTGGGGGTGCGTGGTTCTTTATCAAGCCCAATTGAGCCTGGCACTTCCGGCATTCGTCCATTATCCACTCGGCGAAGCGGTGGCGCTT‑GGCTGTGTGGGCCa                                                                                                                                                    <  2:71518/143‑1 (MQ=255)  tCCATTTGGATACCGCCGGTTATCGCACCTGGGGTGGTGATGGCGGTGCGGGGGCGTCGTTCTGTATCAACCCCAAATGAGCCAGGCACTTCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCaga                                                                                                                                                  <  8:29505/149‑1 (MQ=255)    cATTTGGATACCGCCGGTTATCGCACCTGGGGTGGTGATGGCGGTGCGGGGGCGTCGTTCTGTATCAACCCCAAATGAGCCAGGCACTTCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAgg                                                                                                                                                <  6:235265/149‑1 (MQ=255)    cATTTGGATACCGCCGGTTATCGCACCTGGGGTGGTGATGGCGGTGCGGGGGCGTCGTTCTGTATCAACCCCAAATGAGCCAGGCACTTCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAgg                                                                                                                                                >  5:63911/1‑149 (MQ=255)              ccgccgGTTATCGCACCTGGGGTGGTGATGGCGGTGCGGGGGCGTCGTTCTGTATCAACCCCAAATGAGCCAGGCACTTCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTg                                                                                                                                      <  5:338484/149‑1 (MQ=255)                 ccgGTTATCGCACCTGGGGTGGTGATGGCGGTGCGGGGGCGTCGTTCTGTATCAACCCCAAATGAGCCAGGCACTTCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAg                                                                                                                                    >  2:376319/1‑148 (MQ=255)                                 gggTGGTGATGGCGGTGCGGGGGCGTCGTTCTGTATCAACCCCAAATGAGCCAGGCACTTCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCtaccacctgctcagcccgcagcctctggccga                                                                                                                     <  5:99121‑M1/147‑33 (MQ=255)                                 gggTGGTGATGGCGGTGCGGGGGCGTCGTTCTGTATCAACCCCAAATGAGCCAGGCACTTCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAggccga                                                                                                                     >  6:63911‑M2/1‑141 (MQ=255)                                   gtggtgATGGCGGTGCGGGGGCGTCGTTCTGTATCAACCCCAAATGAGCCAGGCACTTCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCtaccacctgctcagcccgcagcctctggccgacagc                                                                                                                 >  8:78969‑M1/1‑113 (MQ=255)                                    tggtgATGGCGGTGCGGGGGCGTCGTTCTGTATCAACCCCAAATGAGCCAGGCACTTCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCtaccacctgctcagcccgcagcctctggccgacagcg                                                                                                                <  7:78969‑M1/149‑38 (MQ=255)                                       tgATGGCGGTGCGGGGGCGTCGTTCTGTATCAACCCCAAATGAGCCAGGCACTTCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATcgc                                                                                                             >  6:263367/1‑149 (MQ=255)                                             cGGTGCGGGGGCGTCGTTCTGTATCAACCCCAAATGAGCCAGGCACTTCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGcaca                                                                                                        >  3:92488/1‑148 (MQ=255)                                                         gtcgtTCTGTATCAACCCCAAATGAGCCAGGCACTTCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGgcg                                                                                           >  2:268618/1‑149 (MQ=255)                                                            gtTCTGTATCAACCCCAAATGAGCCAGGCACTTCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGgc                                                                                            >  7:46541/1‑145 (MQ=255)                                                            gtTCTGTATCAACCCCAAATGAGCCAGGCACTTCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGgc                                                                                            <  8:46541/145‑1 (MQ=255)                                                                      aaCCCCAAATGAGCGAGGCACTTCCGTCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGccc                                                                              <  1:151699/149‑1 (MQ=255)                                                                      aaCCCCAAATGAGCCAGGCACTTCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCGT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGcc                                                                               <  6:159233/148‑1 (MQ=255)                                                                         cccAAATGAGCCAGGCACTACCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGcc                                                                                         >  3:72516/1‑135 (MQ=255)                                                                         cccAAATGAGCCAGGCACTACCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGcc                                                                                         <  4:72516/135‑1 (MQ=255)                                                                                    cAGGCACTTCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTtcgt                                                                >  8:294631/1‑149 (MQ=255)                                                                                       gCACTTCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTcgc                                                             <  2:167498/149‑1 (MQ=255)                                                                                            tCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGAGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCAc                                                         >  7:9515/1‑148 (MQ=255)                                                                                              cGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCa                                                       >  8:238685/1‑148 (MQ=255)                                                                                               ggCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGgcgc                                                                                          <  5:142832/112‑1 (MQ=255)                                                                                               ggCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGgcgc                                                                                          >  6:142832/1‑112 (MQ=255)                                                                                               ggCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCAt                                                      >  7:216095/1‑148 (MQ=255)                                                                                                    tCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAg                                                                                    >  7:136066/1‑113 (MQ=255)                                                                                                    tCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAg                                                                                    <  8:136066/113‑1 (MQ=255)                                                                                                      gTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGc                                                                                >  5:389193/1‑115 (MQ=255)                                                                                                      gTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGc                                                                                <  6:389193/115‑1 (MQ=255)                                                                                                       tCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCt                                               >  4:149105/1‑147 (MQ=255)                                                                                                       tCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGa                                             <  7:294631/149‑1 (MQ=255)                                                                                                              tCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAAt                                       <  3:149105/148‑1 (MQ=255)                                                                                                                 aCTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAgg                                                                                                                                >  1:152852/1‑56 (MQ=255)                                                                                                                 aCTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAgg                                                                                                                                <  2:152852/56‑1 (MQ=255)                                                                                                                 aCTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGc                                    >  3:30323/1‑148 (MQ=255)                                                                                                                  cagcggcaaGCGCCAGCGCTTCGCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGc                                    >  6:1830/8‑148 (MQ=255)                                                                                                                     ggCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGc                               <  1:268618/149‑1 (MQ=255)                                                                                                                        gAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGcc                              >  3:54978/1‑147 (MQ=255)                                                                                                                             gcTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCg                       >  4:132744/1‑149 (MQ=255)                                                                                                                              cTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCgg                      <  3:132744/149‑1 (MQ=255)                                                                                                                               tGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGgc                     >  8:102464/1‑149 (MQ=255)                                                                                                                                 gcgcTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGgcgc                   >  3:261895/1‑149 (MQ=255)                                                                                                                                  cgcTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCAcc                                                        <  5:276102/111‑1 (MQ=255)                                                                                                                                  cgcTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCAcc                                                        >  6:276102/1‑111 (MQ=255)                                                                                                                                   gcTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGGCGCTg                 >  6:234764/1‑149 (MQ=255)                                                                                                                                   gcTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGGCGCTg                 <  5:263367/149‑1 (MQ=255)                                                                                                                                        gCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGGCGCTggcgg             >  3:258922/1‑149 (MQ=255)                                                                                                                                        gCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGGCGCTggcgg             >  6:131297/1‑149 (MQ=255)                                                                                                                                          cGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAggccgacagcggcaagcgccagcgcttcgccgagtggataatggacgaatgccggaagtgcctggctcatttggggttgatacagaacgacgcccccgcaccgccatcacca           <  7:78969‑M2/149‑113 (MQ=255)                                                                                                                                          cGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGGCGCTGGCGGcc           >  4:264472/1‑149 (MQ=255)                                                                                                                                           gCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAggccgacagcggcaagcgccagcgcttcgccgagtggataatggacgaatgccggaagtgcctggctcatttggggttgatacagaacgacgcccccgcaccgccatcaccac          >  8:78969‑M2/1‑36 (MQ=255)                                                                                                                                           gCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGGCGCTGGCGGCCt          <  1:376319/149‑1 (MQ=255)                                                                                                                                            cTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGTCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGGCGCTGGCGGCCt          >  2:122299/1‑148 (MQ=255)                                                                                                                                               tCGGCCtaccacctgctcagcccgcagcctctggccgacagcggcaagcgccagcgcttcgccgagtggataatggacgaatgccggaagtgcctggctcatttggggttgatacagaacgacgcccccgcaccgccatcaccaccc        >  6:63911‑M1/1‑6 (MQ=255)                                                                                                                                               tCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAggccgacagcggcaagcgccagcgcttcgccgagtggataatggacgaatgccggaagtgcctggctcatttggggttgatacagaacgacgcccccgcaccgccatcaccaccc        <  5:99121‑M2/147‑116 (MQ=255)                                                                                                                                                   ccAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTTCGGCGCTGGCGGCCTGAATCGAc  <  7:238685/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    ATCCATTTGGATACCGCCGGTTATCGCACCTGGGGTGGTGATGGCGGTGCGGGGGCGTCGTTCTGTATCAACCCCAAATGAGCCAGGCACTTCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGGCGCTGGCGGCCTGAATCGAC  >  NC_002947/811314‑811607

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.