New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 811460	44 (0.740)	3 (0.050)	3/244	NT	6.1%	coding (792/918 nt)	PP_0698	LysR family transcriptional regulator
	?	NC_002947	= 811486	51 (0.910)					coding (766/918 nt)	PP_0698	LysR family transcriptional regulator

GGGTGGTGATGGCGGTGCGGGGGCGTCGTTCTGTATCAACCCCAAATGAGCCAGGCACTTCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGGCGCTGGCGGCCTGAATCGACAGGTAGAAATGTTCGTAGTCGC  >  NC_002947/811346‑811629                                                                                                                                              |                                                                                                                                                gggTGGTGATGGCGGTGCGGGGGCGTCGTTCTGTATCAACCCCAAATGAGCCAGGCACTTCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAggccga                                                                                                                                           >  6:63911‑M2/1‑141 (MQ=255)       tgATGGCGGTGCGGGGGCGTCGTTCTGTATCAACCCCAAATGAGCCAGGCACTTCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATcgc                                                                                                                                   >  6:263367/1‑149 (MQ=255)             cGGTGCGGGGGCGTCGTTCTGTATCAACCCCAAATGAGCCAGGCACTTCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGcaca                                                                                                                              >  3:92488/1‑148 (MQ=255)                         gtcgtTCTGTATCAACCCCAAATGAGCCAGGCACTTCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGgcg                                                                                                                 >  2:268618/1‑149 (MQ=255)                            gtTCTGTATCAACCCCAAATGAGCCAGGCACTTCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGgc                                                                                                                  <  8:46541/145‑1 (MQ=255)                            gtTCTGTATCAACCCCAAATGAGCCAGGCACTTCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGgc                                                                                                                  >  7:46541/1‑145 (MQ=255)                                      aaCCCCAAATGAGCGAGGCACTTCCGTCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGccc                                                                                                    <  1:151699/149‑1 (MQ=255)                                      aaCCCCAAATGAGCCAGGCACTTCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCGT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGcc                                                                                                     <  6:159233/148‑1 (MQ=255)                                         cccAAATGAGCCAGGCACTACCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGcc                                                                                                               <  4:72516/135‑1 (MQ=255)                                         cccAAATGAGCCAGGCACTACCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGcc                                                                                                               >  3:72516/1‑135 (MQ=255)                                                    cAGGCACTTCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTtcgt                                                                                      >  8:294631/1‑149 (MQ=255)                                                       gCACTTCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTcgc                                                                                   <  2:167498/149‑1 (MQ=255)                                                            tCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGAGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCAc                                                                               >  7:9515/1‑148 (MQ=255)                                                              cGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCa                                                                             >  8:238685/1‑148 (MQ=255)                                                               ggCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGgcgc                                                                                                                >  6:142832/1‑112 (MQ=255)                                                               ggCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGgcgc                                                                                                                <  5:142832/112‑1 (MQ=255)                                                               ggCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCAt                                                                            >  7:216095/1‑148 (MQ=255)                                                                    tCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAg                                                                                                          >  7:136066/1‑113 (MQ=255)                                                                    tCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAg                                                                                                          <  8:136066/113‑1 (MQ=255)                                                                      gTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGc                                                                                                      <  6:389193/115‑1 (MQ=255)                                                                      gTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGc                                                                                                      >  5:389193/1‑115 (MQ=255)                                                                       tCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCt                                                                     >  4:149105/1‑147 (MQ=255)                                                                       tCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGa                                                                   <  7:294631/149‑1 (MQ=255)                                                                              tCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAAt                                                             <  3:149105/148‑1 (MQ=255)                                                                                 aCTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGc                                                          >  3:30323/1‑148 (MQ=255)                                                                                  cagcggcaaGCGCCAGCGCTTCGCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGc                                                          >  6:1830/8‑148 (MQ=255)                                                                                     ggCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGc                                                     <  1:268618/149‑1 (MQ=255)                                                                                        gAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGcc                                                    >  3:54978/1‑147 (MQ=255)                                                                                             gcTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCg                                             >  4:132744/1‑149 (MQ=255)                                                                                              cTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCgg                                            <  3:132744/149‑1 (MQ=255)                                                                                               tGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGgc                                           >  8:102464/1‑149 (MQ=255)                                                                                                 gcgcTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGgcgc                                         >  3:261895/1‑149 (MQ=255)                                                                                                  cgcTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCAcc                                                                              >  6:276102/1‑111 (MQ=255)                                                                                                  cgcTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCAcc                                                                              <  5:276102/111‑1 (MQ=255)                                                                                                   gcTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGGCGCTg                                       >  6:234764/1‑149 (MQ=255)                                                                                                   gcTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGGCGCTg                                       <  5:263367/149‑1 (MQ=255)                                                                                                        gCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGGCGCTggcgg                                   >  3:258922/1‑149 (MQ=255)                                                                                                        gCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGGCGCTggcgg                                   >  6:131297/1‑149 (MQ=255)                                                                                                          cGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAggccgacagcggcaagcgccagcgcttcgccgagtggataatggacgaatgccggaagtgcctggctcatttggggttgatacagaacgacgcccccgcaccgccatcacca                                 <  7:78969‑M2/149‑113 (MQ=255)                                                                                                          cGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGGCGCTGGCGGcc                                 >  4:264472/1‑149 (MQ=255)                                                                                                           gCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAggccgacagcggcaagcgccagcgcttcgccgagtggataatggacgaatgccggaagtgcctggctcatttggggttgatacagaacgacgcccccgcaccgccatcaccac                                >  8:78969‑M2/1‑36 (MQ=255)                                                                                                           gCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGGCGCTGGCGGCCt                                <  1:376319/149‑1 (MQ=255)                                                                                                            cTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGTCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGGCGCTGGCGGCCt                                >  2:122299/1‑148 (MQ=255)                                                                                                               tCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAggccgacagcggcaagcgccagcgcttcgccgagtggataatggacgaatgccggaagtgcctggctcatttggggttgatacagaacgacgcccccgcaccgccatcaccaccc                              <  5:99121‑M2/147‑116 (MQ=255)                                                                                                                   ccAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTTCGGCGCTGGCGGCCTGAATCGAc                        <  7:238685/149‑1 (MQ=255)                                                                                                                     agagGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGGCGCTGGCGGCCTGAATCGACAg                      >  5:137909/1‑149 (MQ=255)                                                                                                                       agGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATAGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGGCGCTGGCGGCCTGAATCGACAgg                     >  6:24643/1‑148 (MQ=255)                                                                                                                           tGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGGCGCTGGCGGCCTGAATCGACAGGTAGa                 >  4:334079/1‑148 (MQ=255)                                                                                                                             cGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGGCGCTGGCGGCCTGAATCGACAGGTAGaaa               <  6:137909/148‑1 (MQ=255)                                                                                                                             cGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGGCGCTGGCGGCCTGAATCGACAGGTAGAAAt              <  8:216095/149‑1 (MQ=255)                                                                                                                                 cTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGGCGCTGGCGGCCTGAATCGACAGGTAGAAATGTTc          <  3:264472/149‑1 (MQ=255)                                                                                                                                    aGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAg                                                                                           <  3:215841/65‑1 (MQ=255)                                                                                                                                    aGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAg                                                                                           >  4:215841/1‑65 (MQ=255)                                                                                                                                       aGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGGCGCTGGCGGCCTGAATCGACAGGTAGAAATGTTCGTAGTc    >  7:354918/1‑149 (MQ=255)                                                                                                                                         gtggtAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGGCGCTGGCGGCCTGAATCGACAGGTAGAACTGTTAGTAGTCGc  >  8:195037/1‑149 (MQ=255)                                                                                                                                            gtAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGGCGCTGGCGGCCTGAATCGACAGGTAGAAATGtt           >  2:136755/1‑137 (MQ=255)                                                                                                                                            gtAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGGCGCTGGCGGCCTGAATCGACAGGTAGAAATGtt           <  1:136755/137‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                GGGTGGTGATGGCGGTGCGGGGGCGTCGTTCTGTATCAACCCCAAATGAGCCAGGCACTTCCGGCATTCGTCCATTATCCACTCGGCGAAGCGCTGGCGCTT‑GCCGCTGTCGGCCAGAGGCTGCGGGCTGAGCAGGTGGTAGGCCGAGCCATCGCGCACAAAACCGAACGGCGCCTGCAGCTGCCCGCTGTCGAGTTCGTCGCGCACCATCAGGGCTGAGGCAATGGCCAGGCCCAGTCCGGCGCTGGCGGCCTGAATCGACAGGTAGAAATGTTCGTAGTCGC  >  NC_002947/811346‑811629

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.