New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	973460 =	41 (0.690)	4 (0.070)	4/236	NT	9.8%	coding (1752/1863 nt)	secD	protein translocase subunit SecD
	?	NC_002947	973515 =	36 (0.660)					coding (1807/1863 nt)	secD	protein translocase subunit SecD

AAGAGATCGCGGCTGGTATGTCGGTGCAGCGCGCCATCCACGAAGGCTTCAATCGCGCCTACTCGGCAATCGTCGACGCCAACCTGACCACCCTGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGAAAACCATCAATTTCATGGGTGTG  >  NC_002947/973312‑973608                                                                                                                                                     |                                                                                                                                                     gctgaacagcgccaacacggtgaggagcacggtgacggcgaacgcgacattgcgcacacccatgaaattgatggttttcatcgcagctccctcaaacccacagcttcttgatgtcacgcccgccacaggtcaggttgacaaatgcacgg                                                                                                                                                      >  4:281847‑M1/149‑149 (MQ=255)    gaacagcgccaacacggtgaggagcacggtgacggcgaacgcgacattgcgcacacccatgaaattgatgcttttcatcccagatccctcaaacccacagcttcttgatgtcacgcccgccacaggtcaggttgaccaatgcacgGGt                                                                                                                                                    <  5:319047‑M1/3‑1 (MQ=255)          cgccaacacggtgaggagcacggtgacggcgaacgcgacattgcgcacacccatgaaattgatggttttcatcgcagctccctcaaacccacagcttcttgatgtcacgcccgccacaggtcaggttgaccaatgcacgGGTCACCATg                                                                                                                                             >  2:47138‑M1/140‑149 (MQ=255)                   tGTCGGTGCAGCGCGCCATCCACGAAGGCTTCAATCGCGCCTACTCGGCAATCGTCGACGCCAACCTGACCACCCTGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGCCCGGTTAAAGGCTTTGCGGTCACCATGTCCCTCggg                                                                                                                                    <  1:96194/149‑1 (MQ=255)                     tCGGTGCAGCGCGCCATCCACGAAGGCTTCAATCGCGCCTACTCGGCAATCGTCGACGCCAACCTGACCACCCTGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGa                                                                                                                                   <  2:90118/148‑1 (MQ=255)                        ggagcacggtgacggcgaacgcgacattgcgcacacccatgaaattgatggttttcatcgcagctacctcaaacccacagcttcttcatgtcacgcccgccacaggtcaggttgaccaatgcacgGGACACAATGTCACTCGGGAttt                                                                                                                                <  8:224064‑M1/23‑1 (MQ=255)                        gTGCAGCGCGCCATCCACGAAGGCTTCAATCGCGCCTACTCGGCAATCGTCGACGCCAACCTGACCACCCTGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGAtttt                                                                                                                               <  8:339816/149‑1 (MQ=255)                         tGCAGCGCGCCATCCACGAAGGCTTCAATCGCGCCTACTCGGCAATCGTCGACGCCAACCTGACCACCCTGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTc                                                                                                                              <  3:154789/149‑1 (MQ=255)                                          gAAGGCTTCAATCGCGCCTACTCGGCAATCGTCGACGCCAACCTGACCACCCTGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCAccgc                                                                                                             >  1:18179/1‑149 (MQ=255)                                                ttCAATCGCGCCTACTCGGCAATCGTCGACGCCAACCTGACCACCCTGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCAt                                                                                                       >  3:301074/1‑149 (MQ=255)                                                ttCAATCGCGCCTACTCGGCAATCGTCGACGCCAACCTGACCACCCTGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGACCGGTCAAAGGCTTTGCGGTCACCATGTCCCACGGGATATTCACATCGATGTTCACCGCCGTCAt                                                                                                       >  8:357694/1‑149 (MQ=255)                                                     tCGCGCCTACTCGGCAATCGTCGACGCCAACCTGACCACCCTGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGa                                                                                                  >  5:298506/1‑149 (MQ=255)                                                       cacacgcatgaaattgatggttttcatcgcagctccctcaaacccacagcttcttgatgtcactcccgccacaggtcaggttgaccaatgcacgGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGAcc                                                                                                >  7:224064‑M1/95‑149 (MQ=255)                                                           cTACTCGGCAATCGTCGACGCCAACCTGACCACCCTGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTg                                                                                            >  5:77332/1‑149 (MQ=255)                                                                 ggCAATCGTCGACGCCAACCTGACCACCCTGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTg                                                                                       <  3:143209/148‑1 (MQ=255)                                                                  gCAATCGTCGACGCCAACCTGACCACCCTGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGt                                                                                     <  2:18179/149‑1 (MQ=255)                                                                   attgatggttttcatcgcagctccctcaaacccacagcttcttgatgtcacgcccgccacaggtcaggttgaccaatgcacgGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCAt                                                                                                       <  3:6650‑M1/48‑1 (MQ=255)                                                                   attgatggttttcatcgcagctccctcaaacccacagcttcttgatgtcacgcccgccacaggtcaggttgaccaatgcacgGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCAt                                                                                                       >  4:6650‑M1/83‑130 (MQ=255)                                                                     aTCGTCGACGCCAACCTGACCTCCCTGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCACTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCaa                                                                                  <  7:357694/149‑1 (MQ=255)                                                                     aTCGTCGACGCCAACCTGACCACCCTGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCaa                                                                                  <  4:301074/149‑1 (MQ=255)                                                                                    cTGACCACCCTGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTggcgg                                                                   >  4:369376/1‑149 (MQ=255)                                                                                      gACCACCCTGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTc                                                                                                                                       <  7:116686/79‑1 (MQ=255)                                                                                      gACCACCCTGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCAAGTCCCTc                                                                                                                                       >  8:116686/1‑79 (MQ=255)                                                                                           cccTGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGAc                                                            <  2:38967/149‑1 (MQ=255)                                                                                            ccTGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACa                                                           >  5:127808/1‑149 (MQ=255)                                                                                              tGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACAGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACGTGTGGCGGGCGTGACAt                                                          >  6:319047/1‑148 (MQ=255)                                                                                                ttGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCa                                                        <  6:127808/148‑1 (MQ=255)                                                                                                             tCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGtt                                          >  5:201766/1‑149 (MQ=255)                                                                                                                tGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTggc                                                                     <  2:235473/119‑1 (MQ=255)                                                                                                                tGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTggc                                                                     >  1:235473/1‑119 (MQ=255)                                                                                                                 gTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCATCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCaa                                                       <  6:87815/132‑1 (MQ=255)                                                                                                                 gTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCATCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCaa                                                       >  5:87815/1‑132 (MQ=255)                                                                                                                    tGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAac                                                                                 >  4:374174/1‑103 (MQ=255)                                                                                                                    tGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAac                                                                                 <  3:374174/103‑1 (MQ=255)                                                                                                                      ccATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGc                                 >  7:333609/1‑149 (MQ=255)                                                                                                                        aTGGGTACCGGCCCGTTCTAAGGCTTTGGGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCTCCGCCGTCATGGTGTCCCGTTCATTGGTCAACCTGACCTGTGGCTGGCGTGACATCAAGAAGCTGTGTGTTTGAGGGAGCTg                               <  5:197723/149‑1 (MQ=255)                                                                                                                           ggTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGt                                                               >  8:245826/1‑114 (MQ=255)                                                                                                                           ggTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGt                                                               <  7:245826/114‑1 (MQ=255)                                                                                                                                cGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGaa                        >  3:252486/1‑148 (MQ=255)                                                                                                                                  gCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTGAacctgac                                                                            >  6:130121/1‑94 (MQ=255)                                                                                                                                  gCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAacctgac                                                                            <  5:130121/94‑1 (MQ=255)                                                                                                                                  gCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGAAAAc                     >  6:363230/1‑149 (MQ=255)                                                                                                                                     cGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGGGATGAAAACCAt                  >  8:60216/1‑149 (MQ=255)                                                                                                                                      ggTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGAAAACCATc                 <  3:369376/149‑1 (MQ=255)                                                                                                                                            aGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCAt                                                                                                       >  7:171352/1‑57 (MQ=255)                                                                                                                                            aGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCAt                                                                                                       <  8:171352/57‑1 (MQ=255)                                                                                                                                             ggCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGAAAACCATCAATTTCa          <  6:201766/149‑1 (MQ=255)                                                                                                                                               cTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGAAAACCATCAATTTCATg        <  6:77332/149‑1 (MQ=255)                                                                                                                                                tttGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGt                                                                                             >  4:243204/1‑63 (MQ=255)                                                                                                                                                tttGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGt                                                                                             <  3:243204/63‑1 (MQ=255)                                                                                                                                                     GGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGGAAACCATCAATTTCATGGGtgtg  <  1:214096‑M1/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     AAGAGATCGCGGCTGGTATGTCGGTGCAGCGCGCCATCCACGAAGGCTTCAATCGCGCCTACTCGGCAATCGTCGACGCCAACCTGACCACCCTGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGAAAACCATCAATTTCATGGGTGTG  >  NC_002947/973312‑973608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.