New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	973460 =	41 (0.690)	4 (0.070)	4/236	NT	9.8%	coding (1752/1863 nt)	secD	protein translocase subunit SecD
	?	NC_002947	973515 =	36 (0.660)					coding (1807/1863 nt)	secD	protein translocase subunit SecD

CTACTCGGCAATCGTCGACGCCAACCTGACCACCCTGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGAAAACCATCAATTTCATGGGTGTGCGCAATGTCGCGTTCGCCGTCACCGTGCTCCTCACCGTGTTGGCGCTGTTCAGC  >  NC_002947/973370‑973662                                                                                                                                                  |                                                                                                                                                    cTACTCGGCAATCGTCGACGCCAACCTGACCACCCTGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTg                                                                                                                                                  >  5:77332/1‑149 (MQ=255)       ggCAATCGTCGACGCCAACCTGACCACCCTGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTg                                                                                                                                             <  3:143209/148‑1 (MQ=255)        gCAATCGTCGACGCCAACCTGACCACCCTGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGt                                                                                                                                           <  2:18179/149‑1 (MQ=255)           aTCGTCGACGCCAACCTGACCTCCCTGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCACTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCaa                                                                                                                                        <  7:357694/149‑1 (MQ=255)           aTCGTCGACGCCAACCTGACCACCCTGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCaa                                                                                                                                        <  4:301074/149‑1 (MQ=255)                          cTGACCACCCTGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTggcgg                                                                                                                         >  4:369376/1‑149 (MQ=255)                                 cccTGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGAc                                                                                                                  <  2:38967/149‑1 (MQ=255)                                  ccTGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACa                                                                                                                 >  5:127808/1‑149 (MQ=255)                                    tGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACAGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACGTGTGGCGGGCGTGACAt                                                                                                                >  6:319047/1‑148 (MQ=255)                                      ttGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCa                                                                                                              <  6:127808/148‑1 (MQ=255)                                                   tCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGtt                                                                                                >  5:201766/1‑149 (MQ=255)                                                      tGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTggc                                                                                                                           >  1:235473/1‑119 (MQ=255)                                                      tGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTggc                                                                                                                           <  2:235473/119‑1 (MQ=255)                                                       gTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCATCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCaa                                                                                                             <  6:87815/132‑1 (MQ=255)                                                       gTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCATCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCaa                                                                                                             >  5:87815/1‑132 (MQ=255)                                                          tGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAac                                                                                                                                       >  4:374174/1‑103 (MQ=255)                                                          tGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAac                                                                                                                                       <  3:374174/103‑1 (MQ=255)                                                            ccATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGc                                                                                       >  7:333609/1‑149 (MQ=255)                                                              aTGGGTACCGGCCCGTTCTAAGGCTTTGGGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCTCCGCCGTCATGGTGTCCCGTTCATTGGTCAACCTGACCTGTGGCTGGCGTGACATCAAGAAGCTGTGTGTTTGAGGGAGCTg                                                                                     <  5:197723/149‑1 (MQ=255)                                                                 ggTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGt                                                                                                                     <  7:245826/114‑1 (MQ=255)                                                                 ggTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGt                                                                                                                     >  8:245826/1‑114 (MQ=255)                                                                      cGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGaa                                                                              >  3:252486/1‑148 (MQ=255)                                                                        gCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTGAacctgac                                                                                                                                  >  6:130121/1‑94 (MQ=255)                                                                        gCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAacctgac                                                                                                                                  <  5:130121/94‑1 (MQ=255)                                                                        gCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGAAAAc                                                                           >  6:363230/1‑149 (MQ=255)                                                                           cGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGGGATGAAAACCAt                                                                        >  8:60216/1‑149 (MQ=255)                                                                            ggTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGAAAACCATc                                                                       <  3:369376/149‑1 (MQ=255)                                                                                   ggCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGAAAACCATCAATTTCa                                                                <  6:201766/149‑1 (MQ=255)                                                                                     cTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGAAAACCATCAATTTCATg                                                              <  6:77332/149‑1 (MQ=255)                                                                                      tttGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGt                                                                                                                                                   <  3:243204/63‑1 (MQ=255)                                                                                      tttGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGt                                                                                                                                                   >  4:243204/1‑63 (MQ=255)                                                                                           ggtcaccatgacggcggtgaacatcgaggtgaaaatcccgagggacatggtgaccCGTGCATTGGTCAACCTGACCTGTGGCGGGAGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGAAAACCATCAATTTCATGCGtgtg                                                        >  7:224064‑M2/56‑149 (MQ=255)                                                                                           GGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGGAAACCATCAATTTCATGGGtgtg                                                        <  1:214096‑M1/149‑1 (MQ=255)                                                                                             TCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGAAAACCATCAATTTCATGGGTGTgcg                                                      >  4:252486‑M1/1‑149 (MQ=255)                                                                                               ACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGAACTGTGGCGGGCGTGACATGAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGAAAACCATCAATTTCATGGGTGTgcgc                                                     <  5:272640‑M1/148‑1 (MQ=255)                                                                                                 CATGTCCCTCGGGATTTTCACCTCGATGTTCTCCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGAAAACCATCAATTTCATGGGTGTGCGCAAt                                                  <  6:149530‑M1/149‑1 (MQ=255)                                                                                                  atgacggcggtgaacatcgaggtgaaaatcccgagggacatggtgaccCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGAAAACCATCAAt                                                                    <  3:6650‑M2/82‑1 (MQ=255)                                                                                                  atgacggcggtgaacatcgaggtgaaaatcccgagggacatggtgaccCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGAAAACCATCAAt                                                                    >  4:6650‑M2/49‑130 (MQ=255)                                                                                                    GTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGAAAACCATCAATTTCATGGgt                                                           <  2:256146‑M1/137‑1 (MQ=255)                                                                                                    GTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGAAAACCATCAATTTCATGGgt                                                           >  1:256146‑M1/1‑137 (MQ=255)                                                                                                        cTCGGGATTTTCACCTCGATGTTCACCTCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGAAAACCATCAATTTCATGGGTGTGCGCAATGTCGCGt                                           >  1:209826/1‑149 (MQ=255)                                                                                                             gATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGAAAACCATCAATTTCATGGGTGTGCGCAATGTCGCGTTCGcc                                      <  6:298506/149‑1 (MQ=255)                                                                                                                  tCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGAAAACCATCAATTTCATGGGTGTGCGCAATGTCGCGTTCGCCGTCa                                  <  5:363230/148‑1 (MQ=255)                                                                                                                      cTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGAAAACCATCAATTTCATGGGTGTGCGCAATGTCGCGTTCGCCGTCACCGTg                             >  3:293719/1‑149 (MQ=255)                                                                                                                         gATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGAAAACATTCAATTTCATGGGTGTGCGCAATGACGCGTTCGCCGTCCCCGTGcgc                          >  5:182298/1‑147 (MQ=255)                                                                                                                           aaatcccgagtgacattgtgtccCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATGAAGAAGCTGTGGGTTTGAGGTAGCTGCGATGAAAACCATCAATTTCATGGGTGTGCGCAATGTCGCGTTCGCCGTCACCGTGctcc                         <  8:224064‑M2/125‑1 (MQ=255)                                                                                                                             ttCCCCGCCGGCATGGGTACCCGGGCCTTTGTCAACCGGCCCTGTGGGGGGCGTGAACTCAAGAAGCTGTGGGTTTGTGGGAGCTGCGATGAAAACCATCAATTTCATGGGTGTGCGCAATGTCGCGTTCGCCGTCACCGTGCTCCTCa                      <  6:182298/149‑1 (MQ=255)                                                                                                                                aCCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGAAAACCATCAATTTCATGGGTGTGCGCAATGTCGCGTTCGCCGTCACCGTGCTCCTCAcc                    <  8:333609/148‑1 (MQ=255)                                                                                                                                 ccgccgTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGAAAACCATCAATTTCATGGGTGTGCGCAATGTCGCGTTCGCCGTCACCGTGCTCCTCACCgt                  <  3:364620/149‑1 (MQ=255)                                                                                                                                    ccgTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGGAAACCATCAATTTCATGGGTGTGCGCAATGTCGCGTTCGCCGTCACCGTGCTCCTCACCGTGtt               <  2:214096/149‑1 (MQ=255)                                                                                                                                     cgTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGAAAACCATCAATTTCATGGGTGTGCGCAATGTCGCGTTCGCCGTCACCGTGCTCCTCACCGTGTTg              <  4:293719/149‑1 (MQ=255)                                                                                                                                       tCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGAAAACCATCAATTTCATGGGTGTGCGCAATGTCGCGTTCGCCGTCACCGTGCTCCTCACCGTGTTGgc            >  4:259079/1‑149 (MQ=255)                                                                                                                                        catggtgaccCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGAAAACCATCAATTTCATGGGTGTGCGCAATGTCGCGTTCGCCGTCACCGTGCTCCTCACCGTGTTGgcg           >  2:47138‑M2/11‑149 (MQ=255)                                                                                                                                               accCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGATCTGGGATGAAAAGCATCAATTTCATGGGTGTGCGCAATGTCGCGTTCGCCGTCACCGTGCTCCTCACCGTGTTGGCGCTGTTc     <  5:319047‑M2/145‑1 (MQ=255)                                                                                                                                                 cCGTGCATTTGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGAAAACCATCAATTTCATGGGTGTGCGCAATGTCGCGTTCGCCGTCACCGTGCTCCTCACCGTGTTGGCGCTGTTCAGc  >  4:281847‑M2/2‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                    CTACTCGGCAATCGTCGACGCCAACCTGACCACCCTGTTGGTCGGCGGCATCCTGTTTGCCATGGGTACCGGCCCGGTCAAAGGCTTTGCGGTCACCATGTCCCTCGGGATTTTCACCTCGATGTTCACCGCCGTCATGGTGACCCGTGCATTGGTCAACCTGACCTGTGGCGGGCGTGACATCAAGAAGCTGTGGGTTTGAGGGAGCTGCGATGAAAACCATCAATTTCATGGGTGTGCGCAATGTCGCGTTCGCCGTCACCGTGCTCCTCACCGTGTTGGCGCTGTTCAGC  >  NC_002947/973370‑973662

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.