New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2352954 =	41 (0.690)	3 (0.050)	3/240	NT	6.9%	coding (311/1515 nt)	PP_2067	EmrB/QacA family drug resistance transporter
	?	NC_002947	2352998 =	43 (0.780)					coding (267/1515 nt)	PP_2067	EmrB/QacA family drug resistance transporter

CCCGGCGGCCTGCGCCACGCTGTTGGCCAGGCTGAACAGCGCCATGCCCATGGCCATCTTGCTGGCCGGCAGTTCGGTGATGATCAGCTGGAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGCCGTCAGCGGAATCATCACGATTTCCGCCACCAGGTAGGCG  >  NC_002947/2352806‑2353100                                                                                                                                                     |                                                                                                                                                   cccGGTGGCCTGCGCCACGCTGTTGGCCAGGCTGAACAGCGCCATGCCCATGGCCATCTTGCTGGCCGGCAGTTCGGTGATGATCAGCTGGAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGatca                                                                                                                                                    >  8:126894/1‑149 (MQ=255)                cACGCTGTTGGCCAGGCTGAACAGCGCCATGCCCATGGCCATCTTGCTGGCCGGCAGTTCGGTGATGATCAGCTGGAACGACAGGGGAATCTGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTgg                                                                                                                                     <  5:23469/149‑1 (MQ=255)                       ttGGCCAGGCTGAACAGCGCCATGCCCATGGCCATCTTGCTGGCCGGCAGTTCGGTGATGATCAGCTGGAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCa                                                                                                                              >  7:148802/1‑149 (MQ=255)                          gCCAGGCTGAACAGCGCCATGCCCATGGCCATCTTGCTGGCCGGCAGTTCGGTGATGATCAGCTGGAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCAt                                                                                                                             >  6:66967/1‑147 (MQ=255)                           ccAGGCTGAACAGCGCCATGCCCATGGCCATCTTGCTGGCCGGCACTTCGGTGATGATCAGATGGAACGACAGCGGAATCAGCACCGCGCCCGCAGCCCCCTGGAACAACCGGATTACGATCATACCCTCCAGATTGGGCGCCCATAAg                                                                                                                          >  4:139437/1‑149 (MQ=255)                                   aaCAGCGCCATGCCCATGGCCATCTTGCTGGCCGGCAGTTCGGTGATGATCAGCTGGAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCAc                                                                                                                  >  1:166233/1‑149 (MQ=255)                                           caccgcctacctggtggcggaaatcgtgatgattccgctgacggcctggttggtggacgtgttctcgctgcgccgggtcatgtggaccggctcgctcatctttctgATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGa                                                                                                          <  8:60761‑M1/43‑1 (MQ=255)                                           cATGCCCATGGCCATCTTGCTGGCCGGCAGTTCGGTGATGATCAGCTGGAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGa                                                                                                          >  1:366289/1‑149 (MQ=255)                                             ccgcctacctggtggcggaaatcgtgatgattccgctgacggcctggttggtggacgtgttctcgctgcgccgggtcatgtggaccggctcgctcatctttctgATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATc                                                                                                        >  7:60761‑M1/105‑149 (MQ=255)                                                 ctacctggtggcggaaatcctgatgattccgctgacggcctggttggtggacgtgttctcgctgcgccgggtcatgtggaccggctcgctcatctttctgATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGaa                                                                                                    >  3:113568‑M1/101‑149 (MQ=255)                                                     gCCATCTTGCTGGCCGGCAGTTCGGTGATGATCAGCTGGAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGTATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGAt                                                                                                <  3:139437/149‑1 (MQ=255)                                                         tCTTGCTGGCCGGCAGTTCGGTGATGATCAGCTGGAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGa                                                                                                                           >  4:241858/1‑118 (MQ=255)                                                         tCTTGCTGGCCGGCAGTTCGGTGATGATCAGCTGGAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGa                                                                                                                           <  3:241858/118‑1 (MQ=255)                                                          cTTGCTGGCCGGCAGTTCGGTGATGATCAGCTGGAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATgagc                                                                                            >  2:319834/1‑148 (MQ=255)                                                               tGGCCGGCAGTTCGGTGATGATCAGCTGGAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCg                                                                                      >  3:284672/1‑149 (MQ=255)                                                                     gCAGTTCGGTGATGATCAGCTGGAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCcac                                                                                <  8:47608/149‑1 (MQ=255)                                                                      cAGTTCGGTGATGATCAGCTGGAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCcaca                                                                               >  2:168182/1‑149 (MQ=255)                                                                             gTGATGATCAGCTGGAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTT‑GGCGCCCATGAGCAGGCCACCGAgg                                                                                                             <  8:165680/111‑1 (MQ=255)                                                                             gTGATGATCAGCTGGAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTT‑GGCGCCCATGAGCAGGCCACCGAgg                                                                                                             >  7:165680/1‑111 (MQ=255)                                                                                   atCAGCTGGAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCa                                                                   <  6:197250/148‑1 (MQ=255)                                                                                    tCAGCTGGAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATgagc                                                                                            >  7:236065/1‑122 (MQ=255)                                                                                    tCAGCTGGAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATgagc                                                                                            <  8:236065/122‑1 (MQ=255)                                                                                         tGGAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGAGCACCCGGATTACGAACATCGCCTCCAGGTTGGGCGCCCAGGAGCAGGCCACCGAGGCGATCAGAAAGAAGAGCGAGCCGGTCGCCATGACCCGGCGCAGCGCGaa                                                            >  7:358976/1‑149 (MQ=255)                                                                                          ggAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCCCCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAac                                                           <  8:148802/149‑1 (MQ=255)                                                                                              cGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGCTCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGt                                                       <  6:214887/149‑1 (MQ=255)                                                                                                aCAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTcc                                                     <  4:284672/149‑1 (MQ=255)                                                                                                    gggAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCAt                                                                                                                             <  6:196900/73‑1 (MQ=255)                                                                                                    gggAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCGGGCCACCGAGGCGATCAGATAGATTCGCGAGCCGGGGCACATGACCCGGCGCAGCGAGAACACGTccccc                                                  >  1:121671/1‑148 (MQ=255)                                                                                                      gAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCaccaac                                               >  4:42218/1‑149 (MQ=255)                                                                                                         tCAGCACCGCGCCCGCCGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGACCATGAGCAGGCCACCGAGGCCGTCAGAAAGATGAGCGAGCCGGTCCACATGACCAGGCGCAGCGAGAACACGTCCACCAACAAg                                            >  7:312562/1‑149 (MQ=255)                                                                                                         tCAGCACCGCGCCCGCAGCCCCCTGGATCACCAGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAg                                            >  6:3491/1‑149 (MQ=255)                                                                                                           aGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCga                                                               <  6:241096/128‑1 (MQ=255)                                                                                                           aGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCga                                                               >  5:241096/1‑128 (MQ=255)                                                                                                           aGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTc                                                      >  5:356715/1‑137 (MQ=255)                                                                                                           aGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTc                                                      <  6:356715/137‑1 (MQ=255)                                                                                                           aGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAgg                                           <  7:126894/148‑1 (MQ=255)                                                                                                            gCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGcc                                         <  2:366289/149‑1 (MQ=255)                                                                                                                cgcgCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATgagcgagc                                                                                        <  4:121871/98‑1 (MQ=255)                                                                                                                cgcgCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATgagcgagc                                                                                        >  3:121871/1‑98 (MQ=255)                                                                                                                     ccGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGCCGTCAGCGGa                                <  2:166233/149‑1 (MQ=255)                                                                                                                           cccccTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGCCGTCAGCGGAatcatc                          <  3:42218/149‑1 (MQ=255)                                                                                                                              ccTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCATTAAAATAAGCGCGCCCGTCACCAAGACCCCGCGCACCGAGAAAACGTCCACCAACCACGCCCTCAGCGGAaacaaaac                        >  1:118092/1‑144 (MQ=255)                                                                                                                                 ggATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGCCGTCAGCGGAATCATCACGAtt                    >  2:170039/1‑149 (MQ=255)                                                                                                                                    tCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGTGAACACGTCCACCAACCAGGCCGTCAGCGGAATCATCACGATTTcc                 <  1:168182/149‑1 (MQ=255)                                                                                                                                               aCGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGCCGTCAGCGGAATCATCACGATTTCCGCCACCAGGt       <  5:66967/148‑1 (MQ=255)                                                                                                                                                   tcatcGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGCCGTCAGCGGAATCATCACGATTTCCGCCACCAGGTAGGCg  >  3:370599/1‑149 (MQ=255)                                                                                                                                                    catcGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGTCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGCCGTCAGCGGAATCATCACGATTTCCGCCACCAGGTAGGCg  <  8:312562/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CCCGGCGGCCTGCGCCACGCTGTTGGCCAGGCTGAACAGCGCCATGCCCATGGCCATCTTGCTGGCCGGCAGTTCGGTGATGATCAGCTGGAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGCCGTCAGCGGAATCATCACGATTTCCGCCACCAGGTAGGCG  >  NC_002947/2352806‑2353100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.