New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2352954 =	41 (0.690)	3 (0.050)	3/240	NT	6.9%	coding (311/1515 nt)	PP_2067	EmrB/QacA family drug resistance transporter
	?	NC_002947	2352998 =	43 (0.780)					coding (267/1515 nt)	PP_2067	EmrB/QacA family drug resistance transporter

TGCCCATGGCCATCTTGCTGGCCGGCAGTTCGGTGATGATCAGCTGGAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGCCGTCAGCGGAATCATCACGATTTCCGCCACCAGGTAGGCGGTGGAGATCCATGAGCCTTCCTCGAAGCTGG  >  NC_002947/2352850‑2353131                                                                                                                                                     |                                                                                                                                      ccgcctacctggtggcggaaatcgtgatgattccgctgacggcctggttggtggacgtgttctcgctgcgccgggtcatgtggaccggctcgctcatctttctgATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATc                                                                                                                                       >  7:60761‑M1/105‑149 (MQ=255)     ctacctggtggcggaaatcctgatgattccgctgacggcctggttggtggacgtgttctcgctgcgccgggtcatgtggaccggctcgctcatctttctgATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGaa                                                                                                                                   >  3:113568‑M1/101‑149 (MQ=255)         gCCATCTTGCTGGCCGGCAGTTCGGTGATGATCAGCTGGAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGTATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGAt                                                                                                                               <  3:139437/149‑1 (MQ=255)              cTTGCTGGCCGGCAGTTCGGTGATGATCAGCTGGAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATgagc                                                                                                                           >  2:319834/1‑148 (MQ=255)                   tGGCCGGCAGTTCGGTGATGATCAGCTGGAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCg                                                                                                                     >  3:284672/1‑149 (MQ=255)                         gCAGTTCGGTGATGATCAGCTGGAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCcac                                                                                                               <  8:47608/149‑1 (MQ=255)                          cAGTTCGGTGATGATCAGCTGGAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCcaca                                                                                                              >  2:168182/1‑149 (MQ=255)                                       atCAGCTGGAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCa                                                                                                  <  6:197250/148‑1 (MQ=255)                                        tCAGCTGGAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATgagc                                                                                                                           >  7:236065/1‑122 (MQ=255)                                        tCAGCTGGAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATgagc                                                                                                                           <  8:236065/122‑1 (MQ=255)                                             tGGAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGAGCACCCGGATTACGAACATCGCCTCCAGGTTGGGCGCCCAGGAGCAGGCCACCGAGGCGATCAGAAAGAAGAGCGAGCCGGTCGCCATGACCCGGCGCAGCGCGaa                                                                                           >  7:358976/1‑149 (MQ=255)                                              ggAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCCCCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAac                                                                                          <  8:148802/149‑1 (MQ=255)                                                  cGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGCTCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGt                                                                                      <  6:214887/149‑1 (MQ=255)                                                    aCAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTcc                                                                                    <  4:284672/149‑1 (MQ=255)                                                        gggAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCGGGCCACCGAGGCGATCAGATAGATTCGCGAGCCGGGGCACATGACCCGGCGCAGCGAGAACACGTccccc                                                                                 >  1:121671/1‑148 (MQ=255)                                                          gAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCaccaac                                                                              >  4:42218/1‑149 (MQ=255)                                                             tCAGCACCGCGCCCGCCGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGACCATGAGCAGGCCACCGAGGCCGTCAGAAAGATGAGCGAGCCGGTCCACATGACCAGGCGCAGCGAGAACACGTCCACCAACAAg                                                                           >  7:312562/1‑149 (MQ=255)                                                             tCAGCACCGCGCCCGCAGCCCCCTGGATCACCAGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAg                                                                           >  6:3491/1‑149 (MQ=255)                                                               aGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCga                                                                                              <  6:241096/128‑1 (MQ=255)                                                               aGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCga                                                                                              >  5:241096/1‑128 (MQ=255)                                                               aGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTc                                                                                     <  6:356715/137‑1 (MQ=255)                                                               aGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTc                                                                                     >  5:356715/1‑137 (MQ=255)                                                               aGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAgg                                                                          <  7:126894/148‑1 (MQ=255)                                                                gCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGcc                                                                        <  2:366289/149‑1 (MQ=255)                                                                    cgcgCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATgagcgagc                                                                                                                       >  3:121871/1‑98 (MQ=255)                                                                    cgcgCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATgagcgagc                                                                                                                       <  4:121871/98‑1 (MQ=255)                                                                         ccGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGCCGTCAGCGGa                                                               <  2:166233/149‑1 (MQ=255)                                                                               cccccTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGCCGTCAGCGGAatcatc                                                         <  3:42218/149‑1 (MQ=255)                                                                                  ccTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCATTAAAATAAGCGCGCCCGTCACCAAGACCCCGCGCACCGAGAAAACGTCCACCAACCACGCCCTCAGCGGAaacaaaac                                                       >  1:118092/1‑144 (MQ=255)                                                                                     ggATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGCCGTCAGCGGAATCATCACGAtt                                                   >  2:170039/1‑149 (MQ=255)                                                                                        tCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGTGAACACGTCCACCAACCAGGCCGTCAGCGGAATCATCACGATTTcc                                                <  1:168182/149‑1 (MQ=255)                                                                                                   aCGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGCCGTCAGCGGAATCATCACGATTTCCGCCACCAGGt                                      <  5:66967/148‑1 (MQ=255)                                                                                                    ttctgatcgcctcggtggcctgctcatgggcgcccaacctggaggcgatCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGCCGTCAGCGGAATCATCAGGATTTCCGCCACCAGGTAg                                    >  3:113568‑M2/50‑149 (MQ=255)                                                                                                       tcatcGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGCCGTCAGCGGAATCATCACGATTTCCGCCACCAGGTAGGCg                                 >  3:370599/1‑149 (MQ=255)                                                                                                        gatcgcctcggtggcctgctcatgggcgcccaacctggaggcgatCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGCCGTCAGCGGAATCATCACGATTTCCGCCACCAGGTAGGCgg                                >  7:60761‑M2/46‑149 (MQ=255)                                                                                                        catcGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGTCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGCCGTCAGCGGAATCATCACGATTTCCGCCACCAGGTAGGCg                                 <  8:312562/148‑1 (MQ=255)                                                                                                          tcgcctcggtggcctgctcatgggcgcccaacctggaggcgatCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGCCGTCAGCGGAATCATCACGATTTCCGCCACCAGGTAGGCGGTg                              <  8:60761‑M2/106‑1 (MQ=255)                                                                                                              CTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCTATCAGAAAGATGAGCGAGCCTGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGCCGTCAGCGGAATCATCACGATTTCCGCCACCAGGTAGGCGGTGgaga                          >  5:3491‑M1/1‑149 (MQ=255)                                                                                                               TCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGCCGTCAGCGGAATCATCACGATTTCCGCCACCAGGTAggcgctg                              <  3:310990‑M1/144‑4 (MQ=255)                                                                                                                  aGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGCCGTCAGCGGAATCATCACGATTTCCGCCACCAGGTAGGCGGTGGAGATCCa                      <  2:118092/149‑1 (MQ=255)                                                                                                                     ttGGGCGCCCATGAGCAGGCCACCGAGGGGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGCCGTCAGCGGAATCATCACGATTTc                                                 >  1:215885/1‑119 (MQ=255)                                                                                                                     ttGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGCCGTCAGCGGAATCATCACGATTTc                                                 <  2:215885/119‑1 (MQ=255)                                                                                                                     ttGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGCCGTCAGCGGAATCATCACGATTTCCGCCACCAGGTAGGCGGTGGAGATCCAt                     >  5:304498/1‑147 (MQ=255)                                                                                                                          cgcCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGCCGTCAGCGGAATCATCACGATTTCCGCCACCAGGTAGGCGGTGGAGATCCATGAGCCtt              <  3:113697/149‑1 (MQ=255)                                                                                                                          cgcCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGCCGTCAGCGGAATCATCACGATTTCCGCCACCAGGTAGGCGGTGGAGATCCATGAGCCt               >  4:113697/1‑148 (MQ=255)                                                                                                                           gcCCATGAGCAGCCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGCCGTCAGCGGAATCATCACGATTTCCGCCACCAGGTAGGCGGTGGAGATCCATGAGCCTTc             >  4:1178/1‑149 (MQ=255)                                                                                                                                  aGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGCCGTCAGCGGAATCATCACGATTTCCGCCACCAGGTAGGCGGTGGAGATCCATGAGCCTTCCTCGaa       <  4:370599/148‑1 (MQ=255)                                                                                                                                     aGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGCCGTCAGCGGAATCATCACGATTTCCGCCACCAGGTAGGCGGTGGAGATCCATGAGCCTTCCTCGAAGCTg   <  6:304498/149‑1 (MQ=255)                                                                                                                                      ggCCACCGAGGCGATCAGAAAGATGAGAGAGCCGGTCAACATGACCCGGCGCAGCGAGAACACGTCCACCAACCACGCCGTCAGCGGAATCATCACGAATTCCGCCACCAGGTAGGCGGAGGAGAACCATGAGCCATCCTCGAAGCTgg  >  6:15567/1‑149 (MQ=255)                                                                                                                                       gCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGCCGTCAGCGGAATCATCACGATTTCCGCCACCAGGTAGGCGGTGGAGATCCATGAGCCTTCCTCGAAGCTgg  >  4:202842/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                      TGCCCATGGCCATCTTGCTGGCCGGCAGTTCGGTGATGATCAGCTGGAACGACAGGGGAATCAGCACCGCGCCCGCAGCCCCCTGGATCACCCGGATTACGATCATCGCCTCCAGGTTGGGCGCCCATGAGCAGGCCACCGAGGCGATCAGAAAGATGAGCGAGCCGGTCCACATGACCCGGCGCAGCGAGAACACGTCCACCAACCAGGCCGTCAGCGGAATCATCACGATTTCCGCCACCAGGTAGGCGGTGGAGATCCATGAGCCTTCCTCGAAGCTGG  >  NC_002947/2352850‑2353131

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.