New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2361888	45 (0.760)	3 (0.050)	3/240	NT	7.1%	coding (1989/2724 nt)	PP_2076	hypothetical protein
	?	NC_002947	= 2361912	36 (0.650)					coding (1965/2724 nt)	PP_2076	hypothetical protein

ATAACTGGCTCCAACTTCGAAGCCCGCCGCAGCCGTAGTCATCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCTTCACTCAGGCGAATATCGAC  >  NC_002947/2361744‑2362034                                                                                                                                                  |                                                                                                                                                   aTAACTGGCTCCAACTTCGAAGCCCGCCGCAGCCGTAGTCATCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAacac                                                                                                                                                >  2:86590/1‑149 (MQ=40)        gCTCCAACTTCGAAGCCCGCCGCAGCCGTAGTCATCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACttt                                                                                                                                         <  2:41918/149‑1 (MQ=39)        gCTCCAACTTCGAAGCCCGCCGCAGCCGTAGTCATCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACt                                                                                                                                           <  5:297179/147‑1 (MQ=39)         cTCCAACTTCGAAGCCCGCCGCAGCCGTAGTCATCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTg                                                                                                                                        <  5:334500/149‑1 (MQ=39)          tCCAACTTCGAAGCCCGCCGCAGCCGTAGTCATCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTg                                                                                                                                        >  6:192791/1‑148 (MQ=39)            cAACTTCGAAGCCCGCCGCAGCCGTAGTCATCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTg                                                                                                                                        >  4:335458/1‑146 (MQ=39)                    aaGCCCGCCGCAGCCGTAGTCATCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACt                                                                                                                             <  3:335458/149‑1 (MQ=39)                        ccgccgCAGCCGTAGTCATCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGttc                                                                                                                         >  5:277793‑M2/1‑146 (MQ=255)                           ccgcAGCCGTAGTCATCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGttccgg                                                                                                                      >  2:25767‑M2/1‑143 (MQ=255)                               aGCCGTAGTCATCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAcagtgacttctacaaagtgcgtgtttccgg                                                                                                                      >  1:211042‑M1/1‑115 (MQ=255)                               aGCCGTAGTCATCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAcagtgacttctacaaagtgcgtgtttccgg                                                                                                                      <  2:211042‑M1/145‑31 (MQ=255)                                 ccGTAGTCATCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAcagtgacttctacaaagtgcgtgtttccgggctagt                                                                                                                <  2:136105‑M1/149‑37 (MQ=255)                                 ccGTAGTCATCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTg                                                                                                                 >  4:377414/1‑148 (MQ=39)                                 ccGTAGTCATCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGc                                                                                                                <  8:132781/149‑1 (MQ=39)                                   gTAGTCATCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCAt                                                                                                              <  5:47810/149‑1 (MQ=39)                                          tCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCt                                                                                                       >  2:211348/1‑149 (MQ=39)                                           cgcgGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGCTGCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCt                                                                                                       >  1:99364/1‑149 (MQ=255)                                            gcgGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCtt                                                                                                      <  5:93368/148‑1 (MQ=39)                                                ccgccAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGcc                                                                                                 >  2:114935/1‑149 (MQ=39)                                                       gAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCt                                                                                          >  3:319118/1‑149 (MQ=38)                                                          ttCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATAAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGt                                                                                       >  2:30997/1‑149 (MQ=37)                                                            cGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGc                                                                                            >  6:390002/1‑142 (MQ=37)                                                            cGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGc                                                                                            <  5:390002/142‑1 (MQ=37)                                                              gTCTTCACCCGCGCATCACTGTCAGGTAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAacac                                                                                                                                                <  8:75630/88‑1 (MQ=255)                                                              gTCTTCACCCGCGCATCACTGTCAGGTAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAacac                                                                                                                                                >  7:75630/1‑88 (MQ=255)                                                              gTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAg                                                                                   <  5:275168/149‑1 (MQ=37)                                                               tCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCt                                                                                                       <  7:152467/128‑1 (MQ=38)                                                               tCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCt                                                                                                       >  8:152467/1‑128 (MQ=38)                                                               tCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAgg                                                                                  <  1:114935/149‑1 (MQ=37)                                                                            aTCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCt                                                                     <  2:99364/149‑1 (MQ=37)                                                                                  gTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCa                                                                                               <  7:293071/117‑1 (MQ=39)                                                                                  gTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCa                                                                                               >  8:293071/1‑117 (MQ=39)                                                                                   tCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCctgc                                                              >  2:262626/1‑149 (MQ=37)                                                                                   tCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCct                                                                <  1:211348/147‑1 (MQ=37)                                                                                    ctgacAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCaa                                                                                              >  8:42507/5‑116 (MQ=255)                                                                                    ctgacAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCaa                                                                                              <  7:42507/112‑1 (MQ=255)                                                                                     aGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCaa                                                                                              >  5:353272/1‑115 (MQ=39)                                                                                     aGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCaa                                                                                              <  6:353272/115‑1 (MQ=39)                                                                                           ttCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGtt                                                      <  3:377414/149‑1 (MQ=34)                                                                                              gc‑gcgcTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCTCACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGCTACCTTGATACCTGGCCTGCGCTGCGTtgt                                                    <  1:30997/148‑1 (MQ=21)                                                                                                     tttGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGa                                             >  4:73701/1‑149 (MQ=34)                                                                                                         aaGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGCAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATggg                                         >  5:205808/1‑149 (MQ=21)                                                                                                            gCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTg                                      >  5:35983/1‑149 (MQ=34)                                                                                                               aTCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGc                                                                                                                <  2:215450/72‑1 (MQ=39)                                                                                                               aTCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTACAAGTCACTGTTCCGGGCCTGc                                                                                                                >  1:215450/1‑72 (MQ=255)                                                                                                                tCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCg                                  <  3:73701/149‑1 (MQ=34)                                                                                                                          cTCCAGCAGTCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAg                        >  6:376031/1‑149 (MQ=21)                                                                                                                             cagcagGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCtt                     >  7:53481/1‑149 (MQ=34)                                                                                                                                  ggCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCTTCACTc                <  4:319118/149‑1 (MQ=34)                                                                                                                                   tcacaCTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCTTCACTCa               <  5:376031/148‑1 (MQ=21)                                                                                                                                   gCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCTTCACt                 >  4:342567/1‑147 (MQ=34)                                                                                                                                       acTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGttccgggctagtgtgcctgctggaggggatgctgatggccttcaaagcgcgcgaactgcctgacagtgatgcgcgggtgaagaccgaactcctggcggccgcgatgactacgg           <  2:136105‑M2/149‑114 (MQ=255)                                                                                                                                           gCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCTTc                    <  4:203756/136‑1 (MQ=32)                                                                                                                                           gCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCTTc                    >  3:203756/1‑136 (MQ=32)                                                                                                                                             ccGGAAcagtgacttctacaaagtgcgtgtttccgggctagtgtgcctgctggaggggatgctgatggccttcaaagcgcgcgaactgcctgacagtgatgcgcgggtgaagaccgaactcctggcggccgcgatgactacggctgcgg     >  2:25767‑M1/1‑6 (MQ=255)                                                                                                                                             ccGGAAACACGCACTTTGTAGAAGTCACTGttccgggctagtgtgcctgctggaggggatgctgatggccttcaaagcgcgcgaactgcctgacagtgatgcgcgggtgaagaccgaactcctggcggccgcgatgactacggct         >  1:211042‑M2/1‑30 (MQ=255)                                                                                                                                             ccGGAAACACGCACTTTGTAGAAGTCACTGttccgggctagtgtgcctgctggaggggatgctgatggccttcaaagcgcgcgaactgcctgacagtgatgcgcgggtgaagaccgaactcctggcggccgcgatgactacggct         <  2:211042‑M2/145‑116 (MQ=255)                                                                                                                                              cGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTGGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCTTCACTCAGGCGAATATc     >  3:7858/1‑148 (MQ=14)                                                                                                                                                gAAcagtgacttctacaaagtgcgtgtttccgggctagtgtgcctgctggaggggatgctgatggccttcaaagcgcgcgaactgcctgacagtgatgcgcgggtgaagaccgaactcctggcggccgcgatgactacggctgcggcgg  >  5:277793‑M1/1‑3 (MQ=255)                                                                                                                                                  |                                                                                                                                                   ATAACTGGCTCCAACTTCGAAGCCCGCCGCAGCCGTAGTCATCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCTTCACTCAGGCGAATATCGAC  >  NC_002947/2361744‑2362034

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.