| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2361888 | 45 (0.760) | 3 (0.050) | 3/240 | NT | 7.1% | coding (1989/2724 nt) | PP_2076 | hypothetical protein |
| ? | NC_002947 | = 2361912 | 36 (0.650) | coding (1965/2724 nt) | PP_2076 | hypothetical protein | |||||
CCGCCGCAGCCGTAGTCATCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCTTCACTCAGGCGAATATC > NC_002947/2361767‑2362031 | ccgccgCAGCCGTAGTCATCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGttc > 5:277793‑M2/1‑146 (MQ=255) ccgcAGCCGTAGTCATCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGttccgg > 2:25767‑M2/1‑143 (MQ=255) ccGTAGTCATCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTg > 4:377414/1‑148 (MQ=39) ccGTAGTCATCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGc < 8:132781/149‑1 (MQ=39) gTAGTCATCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCAt < 5:47810/149‑1 (MQ=39) tCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCt > 2:211348/1‑149 (MQ=39) cgcgGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGCTGCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCt > 1:99364/1‑149 (MQ=255) gcgGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCtt < 5:93368/148‑1 (MQ=39) ccgccAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGcc > 2:114935/1‑149 (MQ=39) gAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCt > 3:319118/1‑149 (MQ=38) ttCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATAAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGt > 2:30997/1‑149 (MQ=37) cGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGc > 6:390002/1‑142 (MQ=37) cGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGc < 5:390002/142‑1 (MQ=37) gTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAg < 5:275168/149‑1 (MQ=37) tCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCt > 8:152467/1‑128 (MQ=38) tCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCt < 7:152467/128‑1 (MQ=38) tCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAgg < 1:114935/149‑1 (MQ=37) aTCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCt < 2:99364/149‑1 (MQ=37) gTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCa > 8:293071/1‑117 (MQ=39) gTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCa < 7:293071/117‑1 (MQ=39) tCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCctgc > 2:262626/1‑149 (MQ=37) tCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCct < 1:211348/147‑1 (MQ=37) ctgacAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCaa > 8:42507/5‑116 (MQ=255) ctgacAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCaa < 7:42507/112‑1 (MQ=255) aGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCaa > 5:353272/1‑115 (MQ=39) aGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCaa < 6:353272/115‑1 (MQ=39) ttCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGtt < 3:377414/149‑1 (MQ=34) gc‑gcgcTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCTCACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGCTACCTTGATACCTGGCCTGCGCTGCGTtgt < 1:30997/148‑1 (MQ=21) tttGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGa > 4:73701/1‑149 (MQ=34) aaGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGCAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATggg > 5:205808/1‑149 (MQ=21) gCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTg > 5:35983/1‑149 (MQ=34) aTCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGc < 2:215450/72‑1 (MQ=39) aTCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTACAAGTCACTGTTCCGGGCCTGc > 1:215450/1‑72 (MQ=255) tCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCg < 3:73701/149‑1 (MQ=34) cTCCAGCAGTCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAg > 6:376031/1‑149 (MQ=21) cagcagGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCtt > 7:53481/1‑149 (MQ=34) ggCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCTTCACTc < 4:319118/149‑1 (MQ=34) tcacaCTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCTTCACTCa < 5:376031/148‑1 (MQ=21) gCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCTTCACt > 4:342567/1‑147 (MQ=34) acTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGttccgggctagtgtgcctgctggaggggatgctgatggccttcaaagcgcgcgaactgcctgacagtgatgcgcgggtgaagaccgaactcctggcggccgcgatgactacgg < 2:136105‑M2/149‑114 (MQ=255) gCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCTTc < 4:203756/136‑1 (MQ=32) gCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCTTc > 3:203756/1‑136 (MQ=32) ccGGAAACACGCACTTTGTAGAAGTCACTGttccgggctagtgtgcctgctggaggggatgctgatggccttcaaagcgcgcgaactgcctgacagtgatgcgcgggtgaagaccgaactcctggcggccgcgatgactacggct < 2:211042‑M2/145‑116 (MQ=255) ccGGAAACACGCACTTTGTAGAAGTCACTGttccgggctagtgtgcctgctggaggggatgctgatggccttcaaagcgcgcgaactgcctgacagtgatgcgcgggtgaagaccgaactcctggcggccgcgatgactacggct > 1:211042‑M2/1‑30 (MQ=255) cGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTGGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCTTCACTCAGGCGAATATc > 3:7858/1‑148 (MQ=14) | CCGCCGCAGCCGTAGTCATCGCGGCCGCCAGGAGTTCGGTCTTCACCCGCGCATCACTGTCAGGCAGTTCGC‑GCGCTTTGAAGGCCATCAGCATCCCCTCCAGCAGGCACACTAGCCCGGAAACACGCACTTTGTAGAAGTCACTGTTCCGGGCCTGCATCAACCCTTCAGCCCAAGCCTGGTCGAGGTACCTTGATACCTGGCCTGCGCTGCGTTGTGGGTTGATGGGCTGCCCGCTACGTGCAGCTTCACTCAGGCGAATATC > NC_002947/2361767‑2362031 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |