New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2700177 =	44 (0.740)	3 (0.050)	3/248	NT	6.6%	coding (334/1263 nt)	fsr‑II	fosmidomycin efflux system
	?	NC_002947	2700210 =	42 (0.730)					coding (301/1263 nt)	fsr‑II	fosmidomycin efflux system

AAGGTGGATTGCGCGGTACCGAAGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGATACACCAAGGCGATCCAGCCGATCTGGGCGAAGCTCAGCGCGAAA  >  NC_002947/2700029‑2700325                                                                                                                                                     |                                                                                                                                                     aaGGTGGATTGCGCGGTACCGAAGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGAt                                                                                                                                                      <  1:144377/149‑1 (MQ=255)  tgccgtcgatctaccccatgctgaaaagcgatttcgcgctgagcttcgcccagatcggctggatcgccttggtgtatcaggtgaccgcttccctgctgcaaccttgggtcggcatgttcaccgacaagcacccacaaccctacctgtTa                                                                                                                                                     <  3:218122‑M1/2‑1 (MQ=255)       gATTGCGCGGTACCGAAGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACccac                                                                                                                                                <  1:58205/149‑1 (MQ=255)            cgcgGTACCGAAGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCg                                                                                                                                           >  5:183867/1‑149 (MQ=255)                  aCCGAAGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCAc                                                                                                                                       >  5:81402/1‑147 (MQ=255)                      aaGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCAt                                                                                                                                 >  6:81101/1‑149 (MQ=255)                      aaGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCAt                                                                                                                                 >  2:10627/1‑149 (MQ=255)                      aaGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCAt                                                                                                                                 <  2:367246/149‑1 (MQ=255)                         cgcccgccGGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGcc                                                                                                                              <  4:196073/149‑1 (MQ=255)                                cgGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGt                                                                                                                       <  7:126392/149‑1 (MQ=255)                                  gAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCa                                                                                                                                     >  1:261239/1‑133 (MQ=255)                                  gAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCa                                                                                                                                     <  2:261239/133‑1 (MQ=255)                                  gAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGcc                                                                                                                              <  1:178168/140‑1 (MQ=255)                                  gAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGcc                                                                                                                              >  2:178168/1‑140 (MQ=255)                                     gcgctgagcttcgcccagatcggctggatcgccttggtgtatcaggtgaccgcttccctgctgcaaccttgggtcggcatgttcaccgacaagcacccacaaccctacctgtTACCCACCAGCGTCACCAGCATGCCGGCAGGTAACa                                                                                                                   >  5:173478‑M1/113‑148 (MQ=255)                                         ttCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAg                                                                                                              >  4:166441/1‑149 (MQ=255)                                              gCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTtg                                                                                                         <  4:178798/149‑1 (MQ=255)                                                cACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTtgtg                                                                                                       >  2:370435/1‑149 (MQ=255)                                                 aCCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTgg                                                                                                      <  6:183867/149‑1 (MQ=255)                                                       gAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACAAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCtt                                                                                                >  3:343430/1‑149 (MQ=255)                                                         ggCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGt                                                                                              <  5:121334/149‑1 (MQ=255)                                                             tctGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGTGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGt                                                                                          >  8:320132/1‑149 (MQ=255)                                                              tgatcgccttggtgtatcaggtgaccgcttccctgctgcttccttgtgtcggcatgttcaccgacaagcacccacaaccctagctgtTACCCACCAGCGTCACCAGCATGCCGGCAgg                                                                                                                        >  4:238450‑M1/88‑118 (MQ=255)                                                              ggatcgccttggtgtatcaggtgaccgcttccctgctgcaaccttgggtcggcatgttcaccgacaagcacccacaaccctacctgtTACCCACCAGCGTCACCAGCATGCCGGCAgg                                                                                                                        <  3:238450‑M1/31‑1 (MQ=255)                                                                 ggTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGaa                                                                                       <  1:370435/148‑1 (MQ=255)                                                                 ggTGAAAGGTGGCCGAACCCACCCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGa                                                                                        <  2:130271/147‑1 (MQ=255)                                                                     aaaGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGCTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGc                                                                                  >  1:294410/1‑149 (MQ=255)                                                                       aGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGcc                                                                                 >  8:52021/1‑148 (MQ=255)                                                                             ccGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAACGGCGAGCAGGGCGATACCCTCCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGATGTGGGTGCTTGTCGGTGAACATTCCGAccc                                                                            >  7:254248/1‑147 (MQ=255)                                                                             ccGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTtgtg                                                                                                       <  3:238700/120‑1 (MQ=255)                                                                             ccGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTtgtg                                                                                                       >  4:238700/1‑120 (MQ=255)                                                                                  cccACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTg                                                                     <  5:81101/149‑1 (MQ=255)                                                                                  cccACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTg                                                                     <  6:81402/149‑1 (MQ=255)                                                                                  cccACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTg                                                                     <  1:10627/149‑1 (MQ=255)                                                                                     aCGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGAGAACATGCCGACCCAAGGTTgcag                                                                  <  7:52021/149‑1 (MQ=255)                                                                                       gCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTgcag                                                                  >  4:218122/1‑147 (MQ=255)                                                                                         cGACCACGGCGGCAGCCACCACCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAgg                                                              <  4:160197/149‑1 (MQ=255)                                                                                                ggcggcAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCgg                                                       >  6:91357/1‑149 (MQ=255)                                                                                                    gcAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCAc                                                   <  2:294410/149‑1 (MQ=255)                                                                                                      aGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCa                                                                                                                          <  8:168582/76‑1 (MQ=255)                                                                                                         caccaGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGa                                               >  2:198946/1‑148 (MQ=255)                                                                                                                 gcaTTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGATACACCAAg                                      <  5:91357/149‑1 (MQ=255)                                                                                                                           gTTGCCAGCAAAGGCGAGCAGTGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGATACACCAAGGCGATCCAGc                            <  7:320132/149‑1 (MQ=255)                                                                                                                           gTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCTGCAGGTAACATGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGATACACCAAGGCGATCCAGc                            <  4:343430/149‑1 (MQ=255)                                                                                                                           gTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGATACACCAAGGCGATCCAg                             <  1:198946/148‑1 (MQ=255)                                                                                                                             tGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATg                                                                                   <  8:197867/92‑1 (MQ=255)                                                                                                                             tGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATg                                                                                   >  7:197867/1‑92 (MQ=255)                                                                                                                                cAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGt                                                      >  1:161793/1‑118 (MQ=255)                                                                                                                                cAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGt                                                      <  2:161793/118‑1 (MQ=255)                                                                                                                                                  cGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGATACACCAAGGCGATCCAGCCGATCTGGGCGAAGCTCAGcgcg     <  3:166441/149‑1 (MQ=255)                                                                                                                                                     TACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGATACACCAAGGCGATCCAGCCGATCTGGGCGAAGCTCAGCGCGaaa  <  6:118989‑M1/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     AAGGTGGATTGCGCGGTACCGAAGCGCCCGCCGGAAGCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGATACACCAAGGCGATCCAGCCGATCTGGGCGAAGCTCAGCGCGAAA  >  NC_002947/2700029‑2700325

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.