New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2700177 =	44 (0.740)	3 (0.050)	3/248	NT	6.6%	coding (334/1263 nt)	fsr‑II	fosmidomycin efflux system
	?	NC_002947	2700210 =	42 (0.730)					coding (301/1263 nt)	fsr‑II	fosmidomycin efflux system

GCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGATACACCAAGGCGATCCAGCCGATCTGGGCGAAGCTCAGCGCGAAATCGCTTTTCAGCATGGGGTAGATCGACGGCA  >  NC_002947/2700065‑2700356                                                                                                                                                  |                                                                                                                                                   gcgctgagcttcgcccagatcggctggatcgccttggtgtatcaggtgaccgcttccctgctgcaaccttgggtcggcatgttcaccgacaagcacccacaaccctacctgtTACCCACCAGCGTCACCAGCATGCCGGCAGGTAACa                                                                                                                                                  >  5:173478‑M1/113‑148 (MQ=255)     ttCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAg                                                                                                                                             >  4:166441/1‑149 (MQ=255)          gCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTtg                                                                                                                                        <  4:178798/149‑1 (MQ=255)            cACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTtgtg                                                                                                                                      >  2:370435/1‑149 (MQ=255)             aCCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTgg                                                                                                                                     <  6:183867/149‑1 (MQ=255)                   gAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACAAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCtt                                                                                                                               >  3:343430/1‑149 (MQ=255)                     ggCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGt                                                                                                                             <  5:121334/149‑1 (MQ=255)                         tctGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGTGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGt                                                                                                                         >  8:320132/1‑149 (MQ=255)                             ggTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGaa                                                                                                                      <  1:370435/148‑1 (MQ=255)                             ggTGAAAGGTGGCCGAACCCACCCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGa                                                                                                                       <  2:130271/147‑1 (MQ=255)                                 aaaGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGCTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGc                                                                                                                 >  1:294410/1‑149 (MQ=255)                                   aGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGcc                                                                                                                >  8:52021/1‑148 (MQ=255)                                         ccGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAACGGCGAGCAGGGCGATACCCTCCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGATGTGGGTGCTTGTCGGTGAACATTCCGAccc                                                                                                           >  7:254248/1‑147 (MQ=255)                                         ccGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTtgtg                                                                                                                                      >  4:238700/1‑120 (MQ=255)                                         ccGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTtgtg                                                                                                                                      <  3:238700/120‑1 (MQ=255)                                              cccACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTg                                                                                                    <  6:81402/149‑1 (MQ=255)                                              cccACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTg                                                                                                    <  5:81101/149‑1 (MQ=255)                                              cccACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTg                                                                                                    <  1:10627/149‑1 (MQ=255)                                                 aCGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGAGAACATGCCGACCCAAGGTTgcag                                                                                                 <  7:52021/149‑1 (MQ=255)                                                   gCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTgcag                                                                                                 >  4:218122/1‑147 (MQ=255)                                                     cGACCACGGCGGCAGCCACCACCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAgg                                                                                             <  4:160197/149‑1 (MQ=255)                                                            ggcggcAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCgg                                                                                      >  6:91357/1‑149 (MQ=255)                                                                gcAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCAc                                                                                  <  2:294410/149‑1 (MQ=255)                                                                     caccaGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGa                                                                              >  2:198946/1‑148 (MQ=255)                                                                             gcaTTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGATACACCAAg                                                                     <  5:91357/149‑1 (MQ=255)                                                                                       gTTGCCAGCAAAGGCGAGCAGTGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGATACACCAAGGCGATCCAGc                                                           <  7:320132/149‑1 (MQ=255)                                                                                       gTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCTGCAGGTAACATGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGATACACCAAGGCGATCCAGc                                                           <  4:343430/149‑1 (MQ=255)                                                                                       gTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGATACACCAAGGCGATCCAg                                                            <  1:198946/148‑1 (MQ=255)                                                                                         tGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATg                                                                                                                  <  8:197867/92‑1 (MQ=255)                                                                                         tGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATg                                                                                                                  >  7:197867/1‑92 (MQ=255)                                                                                            cAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGt                                                                                     >  1:161793/1‑118 (MQ=255)                                                                                            cAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGt                                                                                     <  2:161793/118‑1 (MQ=255)                                                                                                              tgttacctgccggcatgctggtgacgctggtgggtaACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGATACACCAAGGCGATCCAGCCGATCTGGGCGAAGCTCAgcgc                                     >  5:173478‑M2/37‑148 (MQ=255)                                                                                                              cGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGATACACCAAGGCGATCCAGCCGATCTGGGCGAAGCTCAGcgcg                                    <  3:166441/149‑1 (MQ=255)                                                                                                                 TACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGATACACCAAGGCGATCCAGCCGATCTGGGCGAAGCTCAGCGCGaaa                                 <  6:118989‑M1/149‑1 (MQ=255)                                                                                                                   cctgccggcatgctggtgacgctggtgggtaACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGATACACCAAGGCGATcc                                                              <  3:238450‑M2/87‑1 (MQ=255)                                                                                                                   cctgccggcatgctggtgacgctggtgggtaACAGCTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACACAAGGAAGCAGCAGGGAAGCGGTCACCTGATACACCAAGGCGAtca                                                              >  4:238450‑M2/32‑117 (MQ=255)                                                                                                                    CCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGATACACCAAGGCGATCCAGCCGATCTGGGCGAAGCTCAGCGCGAAATCg                              <  8:134586‑M1/149‑1 (MQ=255)                                                                                                                     caccaGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGATACACCAAGGCGATCCAGCCGATCTGGGCGaa                                              >  6:372885/1‑132 (MQ=255)                                                                                                                     caccaGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGATACACCAAGGCGATCCAGCCGATCTGGGCGaa                                              <  5:372885/132‑1 (MQ=255)                                                                                                                      accaGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGATACACCAAGGCGATCCAGCCGATCTGGGCGAAGCTCAGCGCGAAATCGCt                            <  5:118989/149‑1 (MQ=255)                                                                                                                          gCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGtt                                                                                                     >  6:196053/1‑72 (MQ=255)                                                                                                                          gCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGtt                                                                                                     <  5:196053/72‑1 (MQ=255)                                                                                                                                    cATGCCGGCAGGTAACAGGTAGGGTTGTCGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGATACACCAAGGCGATCCAGCCGATCTGGGCGAAGCTCAGCGCGAAATCGCTTTTCAGCATGGGGt              <  5:221984/149‑1 (MQ=255)                                                                                                                                    cATGCCGGCAGGTAACAGGTAGGGTTGTCGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGATACACCAAGGCGATCCAGCCGATCTGGGCGAAGCTCAGCGCGAAATCGCTTTTCAGCATGGGGt              <  5:227371/149‑1 (MQ=255)                                                                                                                                      tGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATg                                                                                                                  >  8:273428/1‑47 (MQ=255)                                                                                                                                      tGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATg                                                                                                                  <  7:273428/47‑1 (MQ=255)                                                                                                                                        ccGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGATACACCAAGGCGATCCAGCCGATCTGGGCGAAGCTCAGCGCGAAATCGCTTTTCAGCACGGGGTAGAt          <  7:134586/149‑1 (MQ=255)                                                                                                                                         cGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGATACACCAAGGCGATCCAGCCGATCTGGGCGAAGCTCAGCGCGAAATCGCTTTTCAGCATgggg               >  3:26308/1‑143 (MQ=255)                                                                                                                                         cGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGATACACCAAGGCGATCCAGCCGATCTGGGCGAAGCTCAGCGCGAAATCGCTTTTCAGCATgggg               >  6:63888/1‑143 (MQ=255)                                                                                                                                         cGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGATACACCAAGGCGATCCAGCCGATCTGGGCGAAGCTCAGCGCGAAATCGCTTTTCAGCATGGGGTAGATc         <  8:286235/149‑1 (MQ=255)                                                                                                                                             aGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGATACACCAAGGCGATCCAGCCGATCTgg                                                   <  6:292235/103‑1 (MQ=255)                                                                                                                                             aGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGATACACCAAGGCGATCCAGCCGATCTgg                                                   >  5:292235/1‑103 (MQ=255)                                                                                                                                                taACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGATACACCAAGGCGATCCAGCCGATCTGGGCGAAGCTCAGCGCGAAATCGCTTTTCAGCATGGGGTAGATCGACGGCa  <  3:218122‑M2/147‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                   GCCATTCTGGCCACCCGTGAGGCCTCTGGGTGAAAGGTGGCCGAACCCACGCCGACCACGGCGGCAGCCACCAGCAGCATTTCATAGTTGCCAGCAAAGGCGAGCAGGGCGATACCCACCAGCGTCACCAGCATGCCGGCAGGTAACAGGTAGGGTTGTGGGTGCTTGTCGGTGAACATGCCGACCCAAGGTTGCAGCAGGGAAGCGGTCACCTGATACACCAAGGCGATCCAGCCGATCTGGGCGAAGCTCAGCGCGAAATCGCTTTTCAGCATGGGGTAGATCGACGGCA  >  NC_002947/2700065‑2700356

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.