New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3140748 =	51 (0.860)	3 (0.050)	3/246	NT	6.6%	coding (48/387 nt)	PP_2756	hypothetical protein
	?	NC_002947	3140802 =	36 (0.630)					coding (102/387 nt)	PP_2756	hypothetical protein

GCTGCATGACCCGGTGCGCTGGAAGTACCACCTGGTCGGCAATCAACTGCTCAACGGCATCAAGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACGCGCCGACGCCTCGCAGTC  >  NC_002947/3140604‑3140888                                                                                                                                                 |                                                                                                                                             gCTGCATGACCCGGTGCGCTGGAAGTACCACCTGGTCGGCAATCAACTGCTCAACGGCATCAAGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATg                                                                                                                                          >  3:308012/1‑149 (MQ=255)     cATGACCCGGTGCGCTGGAAGTACCACCTGGTCGGCAATCAACTGCTCAACGGCATCAAGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTc                                                                                                                                        <  4:71771/147‑1 (MQ=255)                  gcTGGAAGTACCACCTGGTCGGCAATCAACTGCTCAACGGCATCAAGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCATCTCTGCtt                                                                                                                         <  4:51369/149‑1 (MQ=255)                      gAAGTACCACCTGGTCGGCAATCAACTGCTCAACGGCATCAAGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGAc                                                                                                                      <  7:182646/148‑1 (MQ=255)                        aGTACCACCTGGTCGGCAATCAACTGCTCAACGGCATCAAGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTAc                                                                                                                   >  4:6965/1‑149 (MQ=255)                         gTACCACCTGGTCGGCAATCAACTGCTCAACGGCATCAAGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTAcc                                                                                                                  <  5:292566/149‑1 (MQ=255)                         gTACCACCTGGTCGGCAATCAACTGCTCAACGGCATCAAGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTAcc                                                                                                                  >  2:2011/1‑149 (MQ=255)                          tACCACCTGGTCGGCAATCAACTGCTCAACGGCATCAAGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACGCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCt                                                                                                                 <  6:186514/149‑1 (MQ=255)                            ccaccTGGTCGGCAATCAACTGCTGAACGGCATCATGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCtt                                                                                                                         <  6:107949/139‑1 (MQ=255)                            ccaccTGGTCGGCAATCAACTGCTCAACGGCATCAAGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTgc                                                                                                               >  2:106620/1‑149 (MQ=255)                            ccaccTGGTCGGCAATCAACTGCTCAACGGCATCAAGCCGCAACGTCAATCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCtt                                                                                                                         >  5:107949/1‑139 (MQ=255)                             caccTGGTCGGCAATCAACTGCTCAACGGCATCAAGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTgcg                                                                                                              >  5:359374/1‑149 (MQ=255)                                cTGGTCGGCAATCAACTGCTCAACGGCATCAAGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAgg                                                                                                                                    >  6:10476/1‑124 (MQ=255)                                cTGGTCGGCAATCAACTGCTCAACGGCATCAAGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAgg                                                                                                                                    <  5:10476/124‑1 (MQ=255)                                 tGGTCGGCAATCAACTGCTCAACGGCATCAAGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCggg                                                                                                          >  8:137877/1‑149 (MQ=255)                                   gTCGGCAATCAACTGCTCAACGGCATCAAGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCggg                                                                                                          <  1:2011/147‑1 (MQ=255)                                     cGGCAATCAACTGCTCAACGGCATCAAGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCa                                                                                                        >  1:47217/1‑147 (MQ=255)                                      ggCAATCAACTGCTCAACGGCATCAAGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCaga                                                                                                      <  2:47217/148‑1 (MQ=255)                                              aCTGCTCAACGGCATCAAGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGc                                                                                              >  8:157310/1‑148 (MQ=255)                                               cTGCTCAACGGCATCAAGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCa                                                                                            <  7:50450/149‑1 (MQ=255)                                                  tggcggccgactgcgaggcgtcggcgcgtgccagcaacgcgtcggcggcgtcgatacggatgcgcaactcgccgactgcagcgatgaccagcgctTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGa                                                                                         >  1:53055‑M1/96‑149 (MQ=255)                                                      aCGGCATCAAGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGTCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAgcg                                                                                     >  8:353368/1‑149 (MQ=255)                                                      aCGGCATCAAGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAgcg                                                                                     <  7:142633/149‑1 (MQ=255)                                                         gCATCAAGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTg                                                                                  <  4:308012/149‑1 (MQ=255)                                                          gactgcgaggcgtcggcgcgtgccagcaacgcgtcggcggcgtcgatacggatgcgcaactcgccgactgcagcgatgaccagcgctTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGaa                                                                                        <  8:310069‑M1/55‑1 (MQ=255)                                                          gactgcgaggcgtcggcgcgtgccagcaacgcgtcggcggcgtcgatacggatgcgcaactcgccgactgcagcgatgaccagcgctTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGaa                                                                                        >  7:310069‑M1/88‑142 (MQ=255)                                                              aaGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTg                                                                                                   >  1:329520/1‑127 (MQ=255)                                                              aaGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTg                                                                                                   <  2:329520/127‑1 (MQ=255)                                                               aGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATc                                                                            >  6:254271/1‑149 (MQ=255)                                                                 ccGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGc                                                                          <  6:359374/149‑1 (MQ=255)                                                                 ccGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGc                                                                          <  2:374049/149‑1 (MQ=255)                                                                     aaCGTCATTCCTGGAACTGAGGTCACGCCAT‑TCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAg                                                                     >  4:79867/1‑149 (MQ=255)                                                                         tCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTgg                                                                                 <  8:349842/134‑1 (MQ=255)                                                                         tCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTgg                                                                                 >  7:349842/1‑134 (MQ=255)                                                                                  gAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGtt                                                           <  6:14366/147‑1 (MQ=255)                                                                                       gAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAg                                                                     >  6:224225/1‑132 (MQ=255)                                                                                       gAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAg                                                                     <  5:224225/132‑1 (MQ=255)                                                                                        acgTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATc                                                    <  4:226094/146‑1 (MQ=255)                                                                                           tCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGc                                                                >  1:186616/1‑133 (MQ=255)                                                                                           tCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGc                                                                <  2:186616/133‑1 (MQ=255)                                                                                                           acCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGAcgc                                >  7:264606/1‑149 (MQ=255)                                                                                                             ccATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGt                              >  1:136349/1‑149 (MQ=255)                                                                                                               aTTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTg                            >  5:298659/1‑149 (MQ=255)                                                                                                                ttCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGc                                                                <  2:250156/112‑1 (MQ=255)                                                                                                                ttCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGc                                                                >  1:250156/1‑112 (MQ=255)                                                                                                                   ccAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGaa                                                                                        >  4:72222/1‑85 (MQ=255)                                                                                                                    cAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTgg                        >  6:321270/1‑148 (MQ=255)                                                                                                                     aaGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAACTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCa                      >  3:198831/1‑149 (MQ=255)                                                                                                                        gCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCAcgc                   >  5:155008/1‑149 (MQ=255)                                                                                                                          cGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACgcgc                 <  8:264606/149‑1 (MQ=255)                                                                                                                           ggggTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACGCGcc                <  7:137877/149‑1 (MQ=255)                                                                                                                             ggTGACCTGGCCCACGCCCGTCATGTCGAGGCAACTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACGCGCCGa              <  4:198831/149‑1 (MQ=255)                                                                                                                              gTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACGCGCCGAc             <  5:254271/149‑1 (MQ=255)                                                                                                                                         cACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACgcgc                 <  4:273740/134‑1 (MQ=255)                                                                                                                                         cACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACGCGCCGACGCCTCGCAGTc  >  6:61590/1‑149 (MQ=255)                                                                                                                                                 TCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACGCGCCGACGCCTc        <  3:67133‑M1/135‑1 (MQ=255)                                                                                                                                                 TCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACGCGCCGACGCCTc        >  4:67133‑M1/1‑135 (MQ=255)                                                                                                                                                 |                                                                                                                                             GCTGCATGACCCGGTGCGCTGGAAGTACCACCTGGTCGGCAATCAACTGCTCAACGGCATCAAGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACGCGCCGACGCCTCGCAGTC  >  NC_002947/3140604‑3140888

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.