New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3140748 =	51 (0.860)	3 (0.050)	3/246	NT	6.6%	coding (48/387 nt)	PP_2756	hypothetical protein
	?	NC_002947	3140802 =	36 (0.630)					coding (102/387 nt)	PP_2756	hypothetical protein

ACGGCATCAAGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACGCGCCGACGCCTCGCAGTCGGCCGCCATCGCTTTTCGTTTGGGCGCCGCCGAGGCCGCGCGCCTGGCCGCGCAGACGCATT  >  NC_002947/3140657‑3140950                                                                                                                                                  |                                                                                                                                                     aCGGCATCAAGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGTCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAgcg                                                                                                                                                   >  8:353368/1‑149 (MQ=255) aCGGCATCAAGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAgcg                                                                                                                                                   <  7:142633/149‑1 (MQ=255)    gCATCAAGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTg                                                                                                                                                <  4:308012/149‑1 (MQ=255)     gactgcgaggcgtcggcgcgtgccagcaacgcgtcggcggcgtcgatacggatgcgcaactcgccgactgcagcgatgaccagcgctTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGaa                                                                                                                                                      <  8:310069‑M1/55‑1 (MQ=255)     gactgcgaggcgtcggcgcgtgccagcaacgcgtcggcggcgtcgatacggatgcgcaactcgccgactgcagcgatgaccagcgctTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGaa                                                                                                                                                      >  7:310069‑M1/88‑142 (MQ=255)          aGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATc                                                                                                                                          >  6:254271/1‑149 (MQ=255)            ccGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGc                                                                                                                                        <  6:359374/149‑1 (MQ=255)            ccGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGc                                                                                                                                        <  2:374049/149‑1 (MQ=255)                aaCGTCATTCCTGGAACTGAGGTCACGCCAT‑TCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAg                                                                                                                                   >  4:79867/1‑149 (MQ=255)                    tCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTgg                                                                                                                                               >  7:349842/1‑134 (MQ=255)                    tCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTgg                                                                                                                                               <  8:349842/134‑1 (MQ=255)                             gAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGtt                                                                                                                         <  6:14366/147‑1 (MQ=255)                                  gAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAg                                                                                                                                   <  5:224225/132‑1 (MQ=255)                                  gAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAg                                                                                                                                   >  6:224225/1‑132 (MQ=255)                                   acgTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATc                                                                                                                  <  4:226094/146‑1 (MQ=255)                                      tCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGc                                                                                                                              <  2:186616/133‑1 (MQ=255)                                      tCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGc                                                                                                                              >  1:186616/1‑133 (MQ=255)                                                      acCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGAcgc                                                                                              >  7:264606/1‑149 (MQ=255)                                                        ccATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGt                                                                                            >  1:136349/1‑149 (MQ=255)                                                          aTTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTg                                                                                          >  5:298659/1‑149 (MQ=255)                                                           ttCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGc                                                                                                                              >  1:250156/1‑112 (MQ=255)                                                           ttCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGc                                                                                                                              <  2:250156/112‑1 (MQ=255)                                                              ccAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGaa                                                                                                                                                      >  4:72222/1‑85 (MQ=255)                                                               cAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTgg                                                                                      >  6:321270/1‑148 (MQ=255)                                                                aaGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAACTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCa                                                                                    >  3:198831/1‑149 (MQ=255)                                                                   gCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCAcgc                                                                                 >  5:155008/1‑149 (MQ=255)                                                                     cGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACgcgc                                                                               <  8:264606/149‑1 (MQ=255)                                                                      ggggTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACGCGcc                                                                              <  7:137877/149‑1 (MQ=255)                                                                        ggTGACCTGGCCCACGCCCGTCATGTCGAGGCAACTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACGCGCCGa                                                                            <  4:198831/149‑1 (MQ=255)                                                                         gTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACGCGCCGAc                                                                           <  5:254271/149‑1 (MQ=255)                                                                                    cACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACgcgc                                                                               <  4:273740/134‑1 (MQ=255)                                                                                    cACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACGCGCCGACGCCTCGCAGTc                                                                >  6:61590/1‑149 (MQ=255)                                                                                           ttcatggcgagcactctgcccgcgcaggtagtcaagcagagctgcctcgacatgaAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACGCGCCGACGCCTCGCAGTc                                                                <  8:310069‑M2/87‑1 (MQ=255)                                                                                           ttcatggcgagcactctgcccgcgcaggtagtcaagcagagctgcctcgacatgaAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACGCGCCGACGCCTCGCAGTc                                                                >  7:310069‑M2/56‑142 (MQ=255)                                                                                            tcatggcgagcactctgcccgcgcaggtagtcaagcagagctgcctcgacatgaAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACGCGCCGACGCCTCGCAGTCGGCCGCCa                                                        >  1:53055‑M2/55‑149 (MQ=255)                                                                                            TCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACGCGCCGACGCCTc                                                                      >  4:67133‑M1/1‑135 (MQ=255)                                                                                            TCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACGCGCCGACGCCTc                                                                      <  3:67133‑M1/135‑1 (MQ=255)                                                                                                 tCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACGCGCCGACGCCTCGCAGTCGGCCGCCATCGCt                                                   >  6:217354/1‑149 (MQ=255)                                                                                                    aGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACGCGCCGACGCCTCGCAGTCGGCCGCCATCGCtttt                                                <  6:155008/149‑1 (MQ=255)                                                                                                    aGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACGCGCCGACGCCTCGCAGTCGGCCGCCATCGCtttt                                                >  2:132834/1‑149 (MQ=255)                                                                                                         gCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACGCGCCGACGCCTCGCAGTCGGCCGCCATCGCTTTTCGttt                                           <  5:289291/149‑1 (MQ=255)                                                                                                               cTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACGCGCCGACGCCTCGCAGTCGGCCGCCATCGCTTTTCGTTTggg                                        <  1:106620/146‑1 (MQ=255)                                                                                                                ttGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACGCGCCGACGCCTCGCAGTCGGCCGCCATCGCTTTTCGTTTGGGcgcc                                    >  8:49259/1‑149 (MQ=255)                                                                                                                      aCCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACGCGCCGACGCCTCGCAGTCGGCCGCCATCGCTTTTCGTTTGGGCGCCGCCGAg                              >  4:341347/1‑149 (MQ=255)                                                                                                                        cTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCAc                                                                                   <  8:84001/94‑1 (MQ=255)                                                                                                                        cTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCAc                                                                                   >  7:84001/1‑94 (MQ=255)                                                                                                                                        cTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACGCGCCGACGCCTCGCAGTCGGCCGCCATCGCTTTTCGTTTGGGCGCCGCCGAGGCCGCGCGCCTGGCcgcg            <  5:321270/149‑1 (MQ=255)                                                                                                                                                  aGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACGCGCCGACGCCTCGCAGTCGGCCGCCATCGCTTTTCGTTTGGGCGCCGCCGAGGCCGCGCGCCTGGCCGCGCAGACGCAtt  <  3:341347/149‑1 (MQ=255)                                                                                                                                                  aGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACGCGCCGACGCCTCGCAGTCGGCCGCCATCGCTTTTCGTTTGGGCGCCGCCGAGGCCGCGCGCCTGGCCGCGCAGACGCAt   <  7:157310/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                     ACGGCATCAAGCCGCAACGTCATTCCTGGAACTGAGGTCACGCCATGTCCAACACCCATTCCCAAGGCCGGGGTGACCTGGCCCACGCCCGTCATGTCGAGGCAGCTCTGCTTGACTACCTGCGCGGGCAGAGTGCTCGCCATGAAGCGCTGGTCATCGCTGCAGTCGGCGAGTTGCGCATCCGTATCGACGCCGCCGACGCGTTGCTGGCACGCGCCGACGCCTCGCAGTCGGCCGCCATCGCTTTTCGTTTGGGCGCCGCCGAGGCCGCGCGCCTGGCCGCGCAGACGCATT  >  NC_002947/3140657‑3140950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.