New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3160647	41 (0.690)	4 (0.070)	4/246	NT	7.7%	coding (561/1047 nt)	PP_2775	glycine betaine/L‑proline ABC transporter substrate‑binding protein
	?	NC_002947	= 3160695	57 (1.000)					coding (609/1047 nt)	PP_2775	glycine betaine/L‑proline ABC transporter substrate‑binding protein

AGGTCGCCAAGTTGTTTGCTCCGCTGGGCG‑GCGGCAAGTCGCAGTTGTTGGTCGGGCCGGCAGGTTGGGAGTCGACGTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGCCCAGGAC  >  NC_002947/3160508‑3160794                                                                                                                                             |                                                                                                                                                    agGTCGCCAAGTTGTTTGCTCCGCTGGGCGAGCGGCAAGTCGCAGTTGTTGGTCGGGCCGGCAGGTTGGGAGTCGACGTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTc                                                                                                                                             >  1:34731/1‑149 (MQ=255)   gTCGCCAAGTTGTTTGCTCCGCTGGGCG‑GCGGCAAGTCGCAGTTGTTGGTCGGGCCGGCAGGTTGGGAGTCGACGTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGt                                                                                                                                          <  8:4722/149‑1 (MQ=255)     cGCCAAGTTGTTTGCTCCGCTGGGCG‑GCGGCAAGTCGCAGTTGTTGGTCGGGCCGGCAGGTTGGGAGTCGACGTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGa                                                                                                                                        <  4:174329/149‑1 (MQ=255)      gCCAAGTTGTTTGCTCCGCTGGGCG‑GCGGCAAGTCGCAGTTGTTGGTCGGGCCGGCAGGTTGGGAGTCGACGTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGa                                                                                                                                        <  2:34731/148‑1 (MQ=255)        cAAGTTGTTTGCTCCGCTGGGCG‑GCGGCAAGTCGCAGTTGTTGGTCGGGCCGGCAGGTTGGGAGTCGACGTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACt                                                                                                                                      >  6:95474/1‑148 (MQ=255)                ttGCTCCGCTGGGCG‑GCGGCAAGTCGCAGTTGTTGGTCGGGCCGGCAGGTTGGGAGTCGACGTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGctcggccttgtaggcagcatccag                                                                                                                             >  3:119963‑M1/1‑125 (MQ=255)                    tCCGCTGGGCG‑GCGGCAAGTCGCAGTTGTTGGTCGGGCCGGCAGGTTGGGAGTCGACGTATATCGGCCAGATGAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTg                                                                                                                          >  7:174171/1‑148 (MQ=255)                       gCTGGGCG‑GCGGCAAGTCGCAGTTGTTGGTCGGGCCGGCAGGTTGGGAGTCGACGTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAg                                                                                                                             >  4:61140/1‑142 (MQ=255)                       gCTGGGCG‑GCGGCAAGTCGCAGTTGTTGGTCGGGCCGGCAGGTTGGGAGTCGACGTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAg                                                                                                                             <  3:61140/142‑1 (MQ=255)                                  ggcAAGTCGCAGTTGTTGGTCGGGCCGGCAGGTTGGGAGTCGACGTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGc                                                                                                                                                <  4:364271/113‑1 (MQ=255)                                  ggcAAGTCGCAGTTGTTGGTCGGGCCGGCAGGTTGGGAGTCGACGTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGc                                                                                                                                                >  3:364271/1‑113 (MQ=255)                                       gTCGCAGTTGTTGGTCGGGCCGGCAGGTTGGGAGTCGACGTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGcc                                                                                                        >  5:136386/1‑148 (MQ=255)                                                 ttgGTCGGGCCGGCAGGTTGGGAGTCGACGTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGctcggccttgtaggcagcatccagcttcgcgtaagtcaccgaggcctccgtggaga                                                                                             <  4:119963‑M1/149‑57 (MQ=255)                                                    ggcGGGCCGGCAGGTTGGGAGGCGACGTATATCGGCCAGATAAACGCCAAGGAGTTCGGTTGTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGAt                                                                                          <  6:33419/147‑1 (MQ=255)                                                    gTCGGGCCGGCAGGTTGGGAGTCGACGTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCGCGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGcgtg                                                                                                 >  3:113114‑M2/1‑138 (MQ=255)                                                     tCGGGCCGGCAGGTTGGGAGTCGACGTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGAtt                                                                                         >  6:186713/1‑149 (MQ=255)                                                             gCAGGTTGGGAGTCGACGTATATCGGCCAGATGAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGc                                                                                 <  8:174171/149‑1 (MQ=255)                                                              cAGGTTGGGAGTCGACGTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGcc                                                                                <  5:342587/149‑1 (MQ=255)                                                               aGGTTGGGAGTCGACGTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGcc                                                                                >  3:213825/1‑148 (MQ=255)                                                                        ctCGACGTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTg                                                                                                                          >  5:290186/2‑97 (MQ=255)                                                                        ctCGACGTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTg                                                                                                                          <  6:290186/96‑1 (MQ=255)                                                                             cGTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTgg                                                                 <  5:95474/149‑1 (MQ=255)                                                                              gTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTacacac                                                                         >  8:306972/1‑140 (MQ=255)                                                                              gTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTacacac                                                                         <  7:306972/140‑1 (MQ=255)                                                                              gTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGa                                                                >  8:92177/1‑149 (MQ=255)                                                                              gTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGa                                                                <  4:213825/149‑1 (MQ=255)                                                                              gTATATCGGCCAGACAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGa                                                                >  7:326283/1‑149 (MQ=255)                                                                                atatCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGctcggccttgtaggcagcatccagcttcgcgtaagtcaccgaggcctccgtggagac                                                                                            <  5:305214‑M1/119‑58 (MQ=255)                                                                                atatCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGctcggccttgtaggcagcatccagcttcgcgtaagtcaccgaggcctccgtggagac                                                                                            >  6:305214‑M1/1‑62 (MQ=255)                                                                                        cAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGc                                                      <  6:136386/149‑1 (MQ=255)                                                                                               atctcAAGGATTTCGGTTTTGATGGCAACTTCGAGTCTGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGAc                                               <  7:342023/145‑1 (MQ=255)                                                                                                    aaGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGAc                                               >  8:342023/1‑144 (MQ=255)                                                                                                    aaGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTgcg                                          >  2:186579/1‑149 (MQ=255)                                                                                                        aTTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGt                                      <  8:326283/149‑1 (MQ=255)                                                                                                               ttttGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGAt                                >  3:177990/1‑148 (MQ=255)                                                                                                                      ggCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTa                                                                              >  1:29443/1‑95 (MQ=255)                                                                                                                      ggCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTa                                                                              <  2:29443/95‑1 (MQ=255)                                                                                                                        cAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGAGTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGAGTGGAGCTTCTCCGCCTATGACCTGCGCCGGCTCGATGaa                             >  8:330940/1‑142 (MQ=255)                                                                                                                        cAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGaa                             <  7:330940/142‑1 (MQ=255)                                                                                                                        cAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCAt                      >  5:153895/1‑149 (MQ=255)                                                                                                                          aCTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTc                    <  7:314216/149‑1 (MQ=255)                                                                                                                               gAGTCGGTCTCCACGGAGGCCTCGGTGCCTTACGCGAAGCTGGATGCTGCCTACAAAGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATgg               >  1:295200/1‑149 (MQ=255)                                                                                                                                aGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTa                                                                                    <  5:34266/79‑1 (MQ=255)                                                                                                                                aGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTa                                                                                    >  6:34266/1‑79 (MQ=255)                                                                                                                                     gTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGcgtggagaccgactcgaagttgccatcaaaaccgaaatccttggcttttatctggccgatat                                       >  6:305214‑M2/1‑57 (MQ=255)                                                                                                                                     gTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGcgtggagaccgactcgaagttgccatcaaaaccgaaatccttggcttttatctggccgatat                                       <  5:305214‑M2/119‑63 (MQ=255)                                                                                                                                     gTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGAc                                               >  2:352231/1‑111 (MQ=255)                                                                                                                                     gTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGAc                                               <  1:352231/111‑1 (MQ=255)                                                                                                                                      tctcCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGcgtggagaccgactcgaagttgccatcaaaaccgaaatccttggcttttatctggccgatatacgtcgactcccaacctgccggcccgaccaa        <  4:119963‑M2/149‑94 (MQ=255)                                                                                                                                      tctcCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGAttt                                                                                        >  8:204282/1‑69 (MQ=255)                                                                                                                                       ctcCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCAATCGATGGCTATGcc        >  3:303746/1‑148 (MQ=255)                                                                                                                                         ccACGGACGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTATCTACGCCTACACACCCGACTGGATCATCTCCGCCTATGACCTGCGCCGTCTCCATGAACCGCCATTCGATGGCTATGCCCAg     <  4:29201/149‑1 (MQ=255)                                                                                                                                          cACGctcggccttgtaggcagcatccagcttcgcgtaagtcaccgaggcctccgcggagaccgactcgaagttgccatcaaaaccgaaatccttggcttttatctggccgatatacgtcgactcccaacctgccggcccgac           >  3:113114‑M1/1‑4 (MQ=255)                                                                                                                                          cACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGCCCAg     >  4:208217/1‑148 (MQ=255)                                                                                                                                          cACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGCCCAg     <  4:177990/148‑1 (MQ=255)                                                                                                                                          cACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGCCCAg     >  2:354144/1‑148 (MQ=255)                                                                                                                                           aCGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGCCCAGGa   >  5:239222/1‑149 (MQ=255)                                                                                                                                           aCGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGCCCAGGa   >  4:123672/1‑149 (MQ=255)                                                                                                                                             ggAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACAAACCGGACTGGCTCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGCCAAggcc  >  3:225901/1‑146 (MQ=255)                                                                                                                                             |                                                                                                                                                    AGGTCGCCAAGTTGTTTGCTCCGCTGGGCG‑GCGGCAAGTCGCAGTTGTTGGTCGGGCCGGCAGGTTGGGAGTCGACGTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGCCCAGGAC  >  NC_002947/3160508‑3160794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.