New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3160647	41 (0.690)	4 (0.070)	4/246	NT	7.7%	coding (561/1047 nt)	PP_2775	glycine betaine/L‑proline ABC transporter substrate‑binding protein
	?	NC_002947	= 3160695	57 (1.000)					coding (609/1047 nt)	PP_2775	glycine betaine/L‑proline ABC transporter substrate‑binding protein

GTCGGGCCGGCAGGTTGGGAGTCGACGTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGCCCAGGACAACAAGAAGGGCGACCCGTTGTACAAGGCTGACGGC  >  NC_002947/3160558‑3160830                                                                                                                                          |                                                                                                                                        ggcGGGCCGGCAGGTTGGGAGGCGACGTATATCGGCCAGATAAACGCCAAGGAGTTCGGTTGTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGAt                                                                                                                              <  6:33419/147‑1 (MQ=255) gTCGGGCCGGCAGGTTGGGAGTCGACGTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCGCGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGcgtg                                                                                                                                     >  3:113114‑M2/1‑138 (MQ=255)  tCGGGCCGGCAGGTTGGGAGTCGACGTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGAtt                                                                                                                             >  6:186713/1‑149 (MQ=255)          gCAGGTTGGGAGTCGACGTATATCGGCCAGATGAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGc                                                                                                                     <  8:174171/149‑1 (MQ=255)           cAGGTTGGGAGTCGACGTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGcc                                                                                                                    <  5:342587/149‑1 (MQ=255)            aGGTTGGGAGTCGACGTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGcc                                                                                                                    >  3:213825/1‑148 (MQ=255)                          cGTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTgg                                                                                                     <  5:95474/149‑1 (MQ=255)                           gTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTacacac                                                                                                             <  7:306972/140‑1 (MQ=255)                           gTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTacacac                                                                                                             >  8:306972/1‑140 (MQ=255)                           gTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGa                                                                                                    >  8:92177/1‑149 (MQ=255)                           gTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGa                                                                                                    <  4:213825/149‑1 (MQ=255)                           gTATATCGGCCAGACAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGa                                                                                                    >  7:326283/1‑149 (MQ=255)                                     cAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGc                                                                                          <  6:136386/149‑1 (MQ=255)                                            atctcAAGGATTTCGGTTTTGATGGCAACTTCGAGTCTGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGAc                                                                                   <  7:342023/145‑1 (MQ=255)                                                 aaGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGAc                                                                                   >  8:342023/1‑144 (MQ=255)                                                 aaGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTgcg                                                                              >  2:186579/1‑149 (MQ=255)                                                     aTTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGt                                                                          <  8:326283/149‑1 (MQ=255)                                                            ttttGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGAt                                                                    >  3:177990/1‑148 (MQ=255)                                                                   ggCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTa                                                                                                                  >  1:29443/1‑95 (MQ=255)                                                                   ggCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTa                                                                                                                  <  2:29443/95‑1 (MQ=255)                                                                     cAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGAGTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGAGTGGAGCTTCTCCGCCTATGACCTGCGCCGGCTCGATGaa                                                                 >  8:330940/1‑142 (MQ=255)                                                                     cAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGaa                                                                 <  7:330940/142‑1 (MQ=255)                                                                     cAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCAt                                                          >  5:153895/1‑149 (MQ=255)                                                                       aCTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTc                                                        <  7:314216/149‑1 (MQ=255)                                                                            gAGTCGGTCTCCACGGAGGCCTCGGTGCCTTACGCGAAGCTGGATGCTGCCTACAAAGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATgg                                                   >  1:295200/1‑149 (MQ=255)                                                                             aGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTa                                                                                                                        >  6:34266/1‑79 (MQ=255)                                                                             aGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTa                                                                                                                        <  5:34266/79‑1 (MQ=255)                                                                                  gTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGcgtggagaccgactcgaagttgccatcaaaaccgaaatccttggcttttatctggccgatat                                                                           >  6:305214‑M2/1‑57 (MQ=255)                                                                                  gTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGcgtggagaccgactcgaagttgccatcaaaaccgaaatccttggcttttatctggccgatat                                                                           <  5:305214‑M2/119‑63 (MQ=255)                                                                                  gTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGAc                                                                                   >  2:352231/1‑111 (MQ=255)                                                                                  gTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGAc                                                                                   <  1:352231/111‑1 (MQ=255)                                                                                   tctcCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGcgtggagaccgactcgaagttgccatcaaaaccgaaatccttggcttttatctggccgatatacgtcgactcccaacctgccggcccgaccaa                                            <  4:119963‑M2/149‑94 (MQ=255)                                                                                   tctcCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGAttt                                                                                                                            >  8:204282/1‑69 (MQ=255)                                                                                    ctcCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCAATCGATGGCTATGcc                                            >  3:303746/1‑148 (MQ=255)                                                                                      ccACGGACGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTATCTACGCCTACACACCCGACTGGATCATCTCCGCCTATGACCTGCGCCGTCTCCATGAACCGCCATTCGATGGCTATGCCCAg                                         <  4:29201/149‑1 (MQ=255)                                                                                       cACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGCCCAg                                         >  2:354144/1‑148 (MQ=255)                                                                                       cACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGCCCAg                                         <  4:177990/148‑1 (MQ=255)                                                                                       cACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGCCCAg                                         >  4:208217/1‑148 (MQ=255)                                                                                        aCGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGCCCAGGa                                       >  5:239222/1‑149 (MQ=255)                                                                                        aCGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGCCCAGGa                                       >  4:123672/1‑149 (MQ=255)                                                                                          ggAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACAAACCGGACTGGCTCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGCCAAggcc                                      >  3:225901/1‑146 (MQ=255)                                                                                            aGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGCCCAGGacaac                                   <  3:208217/149‑1 (MQ=255)                                                                                                cTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGccc                                           <  4:218388/137‑1 (MQ=255)                                                                                                cTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGccc                                           >  3:218388/1‑137 (MQ=255)                                                                                                cTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGCCCAGGa                                       >  8:203592/1‑141 (MQ=255)                                                                                                cTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGCCCAGGa                                       <  7:203592/141‑1 (MQ=255)                                                                                                   ggTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGCCCAGGACAACAAGAAgg                            <  6:239222/149‑1 (MQ=255)                                                                                                   ggTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGCCCAGGACAACAAGAAgg                            <  5:186713/149‑1 (MQ=255)                                                                                                     tGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGCCCAGGACAACAAGAAGGGc                          <  3:123672/149‑1 (MQ=255)                                                                                                         ttACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGt                                                                          <  4:227794/97‑1 (MQ=255)                                                                                                         ttACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGAt                                                                    >  8:138376/1‑103 (MQ=255)                                                                                                         ttACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGAt                                                                    <  7:138376/103‑1 (MQ=255)                                                                                                         ttACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGCCCAGGACAACaaga                               <  4:328438/140‑1 (MQ=255)                                                                                                         ttACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGCCCAGGACAACaaga                               >  3:328438/1‑140 (MQ=255)                                                                                                               gAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGCCCAGGACAACAAGAAGGGCGACCCGTTGt                <  1:354144/149‑1 (MQ=255)                                                                                                                   cTGGATGCTGCCTACAAGGCCGAGcgtggagaccgactcgaagttgccatcaaaaccgaaatccttggcttttatctggccgatatacgtcgactcccaacctgccggcccgaccaacaactgcgacttgccgccgcccagcggagcaa            >  3:119963‑M2/1‑24 (MQ=255)                                                                                                                     ggATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACATGCGCCCTCTCGATGAACCGCCAATCGATGGCTATGCCCAGGACAACAAGAAggac                          >  4:258175/1‑131 (MQ=255)                                                                                                                      gATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGCCCAGGACAACAAGAAGGGCGACCCGTTGTACAAgg          <  1:186579/148‑1 (MQ=255)                                                                                                                        tgctgcCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGCCCAGGACAACAAGAAGGGCGACCCGTTGTACAAGGCTg       <  6:153895/149‑1 (MQ=255)                                                                                                                           tgcCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGCCCAGGACAACAAGAAGGGCGACCCGTTGTACAAgg          <  2:97180/143‑1 (MQ=255)                                                                                                                           tgcCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGCCCAGGACAACAAGAAGGGCGACCCGTTGTACAAgg          >  1:97180/1‑143 (MQ=255)                                                                                                                             ccTACAAGGCCGAGCGTGGGGTGATTTTCTTCGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGCCCAGGACAACAAGAAGGGCGACCCGTTGTACAAGGCTGACGgc  >  1:226708/1‑149 (MQ=255)                                                                                                                                          |                                                                                                                                        GTCGGGCCGGCAGGTTGGGAGTCGACGTATATCGGCCAGATAAAAGCCAAGGATTTCGGTTTTGATGGCAACTTCGAGTCGGTCTCCACGGAGGCCTCGGTGACTTACGCGAAGCTGGATGCTGCCTACAAGGCCGAGCGTGGGGTGATTTTCTACGCCTACACACCGGACTGGATCTTCTCCGCCTATGACCTGCGCCGTCTCGATGAACCGCCATTCGATGGCTATGCCCAGGACAACAAGAAGGGCGACCCGTTGTACAAGGCTGACGGC  >  NC_002947/3160558‑3160830

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.