New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3186577	45 (0.760)	4 (0.070)	4/244	NT	8.0%	coding (193/1659 nt)	actP‑II	acetate permease
	?	NC_002947	= 3186643	49 (0.870)					coding (259/1659 nt)	actP‑II	acetate permease

GGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCATGTTCATGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCTTTCTTCGCGGGCTGGCC  >  NC_002947/3186435‑3186725                                                                                                                                               |                                                                                                                                                     ggCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCATGTTCATGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTg                                                                                                                                                <  2:133727/149‑1 (MQ=255)  gCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCATGTTCATGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTgg                                                                                                                                               >  8:139764/1‑149 (MQ=255)       gccttcgcTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCATGTTCATGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCa                                                                                                                                          >  5:178352/1‑149 (MQ=255)              cTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCATGTTCATGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAggg                                                                                                                                   >  5:313234/1‑149 (MQ=255)                cGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCATGTTCATGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCt                                                                                                                                 >  6:180632/1‑149 (MQ=255)                  aCGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCATGTTCATGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTgg                                                                                                                               <  6:178352/149‑1 (MQ=255)                   cGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCATGTTCATGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGc                                                                                                                              <  6:313234/149‑1 (MQ=255)                    gCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCATGTTCATGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGtcgaggcggacatgtagtccccggc                                                                                                                             >  2:124501‑M1/1‑124 (MQ=255)                      tGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCATGTTCATGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAg                                                                                                                            >  5:356637/1‑148 (MQ=255)                       ggTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCATGTTCATGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGaa                                                                                                                          >  1:340978/1‑149 (MQ=255)                        gtcagcgtcagcCGCTCATCCAGCATGCCATAGCCATGTTCATGGTGTTCGTGCTGTTCACCTAGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCAGGCAGAAc                                                                                                                         >  2:170088/1‑149 (MQ=255)                        gtcagcgtcagcCGCTCAACCTGCATGCCATCGGCATGTTCATGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTggcggc                                                                                                                                           >  6:119051/1‑131 (MQ=255)                        gtcagcgtcagcCGCTCAACCTGCATGCCATCGGCATGTTCATGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTggcggc                                                                                                                                           <  5:119051/131‑1 (MQ=255)                         tcagcgtcagcCGCTCAACCTGCATGCCATCGGCATGTTCATGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTggcg                                                                                                                                             >  3:215360/1‑128 (MQ=255)                         tcagcgtcagcCGCTCAACCTGCATGCCATCGGCATGTTCATGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTggcg                                                                                                                                             <  4:215360/128‑1 (MQ=255)                               tcagcCGCTCAACCTGCATGCCATCGGCATGTTCATGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCg                                                                                                                                                   <  2:244385/116‑1 (MQ=255)                                 agcCGCTCAACCTGCATGCCATCGGCATGTTCATGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGgcg                                                                                                                >  7:271925/1‑149 (MQ=255)                                  gcCGCTCAACCTGCATGCCATCGGCATGTTCATGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAggg                                                                                                                                   >  4:25033/1‑129 (MQ=255)                                  gcCGCTCAACCTGCATGCCATCGGCATGTTCATGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAggg                                                                                                                                   <  3:25033/129‑1 (MQ=255)                                             tGCATGCCATCGGCATGTTCATGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGAc                                                                                                    >  8:98852/1‑149 (MQ=255)                                                  gCCATCGGCATGTTCATGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTggcg                                                                                                                                             >  1:323439/1‑103 (MQ=255)                                                  gCCATCGGCATGTTCATGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTggcg                                                                                                                                             <  2:323439/103‑1 (MQ=255)                                                   ccATCGGCATGTTCATGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATg                                                                                              <  7:139764/149‑1 (MQ=255)                                                     aTCGGCATGTTCATGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTc                                                                                            >  5:185341/1‑149 (MQ=255)                                                        ggCATGTTCATGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGc                                                                                         <  8:77419/149‑1 (MQ=255)                                                                cATGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGAcgc                                                                                 <  4:34565‑M2/149‑4 (MQ=255)                                                                 aTGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGAcgct                                                                                >  6:185341‑M2/1‑145 (MQ=255)                                                                  tGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGtcgaggcggacatgtagtccccggccagcgccaggccgttctgccagccctggatgccgccaccggcgctg                                                                               <  4:294816‑M1/149‑72 (MQ=255)                                                                  tGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGAcgctg                                                                               <  5:291558‑M2/149‑6 (MQ=255)                                                                    gtgtTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGtt                                                                             >  8:309579/1‑149 (MQ=255)                                                                    gtgtTCGTGCTCTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGtcgaggcggacatgtagtccccggccagcgccaggccgttctgccagccctggatgccgccaccggcgctgt                                                                              <  6:310351‑M1/148‑73 (MQ=255)                                                                     tgtTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGtcgaggcggacatgtagtccccggccagcgccaggccgttctgccagccctggatgccgccaccggcgctgtag                                                                            <  1:124501‑M1/149‑75 (MQ=255)                                                                      gtTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTgg                                                                           <  6:291558/149‑1 (MQ=255)                                                                       ttCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAgcgc                                                                                                                                                     <  4:146777/74‑1 (MQ=255)                                                                       ttCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTggg                                                                          <  6:356637/149‑1 (MQ=255)                                                                          gTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGAt                                                                       >  5:232995/1‑149 (MQ=255)                                                                                 tCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTAGATGTCCGCCTCGACGCTGTTGGGGATCa                                                                     <  1:214336/144‑1 (MQ=255)                                                                                 tCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCa                                                                     >  2:214336/1‑144 (MQ=255)                                                                                        gtgCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATc                                                          <  7:98852/148‑1 (MQ=255)                                                                                           cATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTaca                                                      >  2:36201/1‑149 (MQ=255)                                                                                           cATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTac                                                       <  3:34565/148‑1 (MQ=255)                                                                                                 cTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCg                                                >  5:178124/1‑149 (MQ=255)                                                                                                     tggGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCat                                            <  7:309579/149‑1 (MQ=255)                                                                                                          ggcgCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTTGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCatggatg                                       <  8:271925/149‑1 (MQ=255)                                                                                                           gcgcGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCatggatgg                                      >  4:374600/1‑149 (MQ=255)                                                                                                             gcgTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCt                                    <  5:180632/149‑1 (MQ=255)                                                                                                                        gCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCt                          >  2:190358/1‑148 (MQ=255)                                                                                                                        gCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCt                          >  2:334149/1‑148 (MQ=255)                                                                                                                           cgacgaCAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTa                                                        <  4:132084/115‑1 (MQ=255)                                                                                                                           cgacgaCAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTa                                                        >  3:132084/1‑115 (MQ=255)                                                                                                                           cgacgaCAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTa                                                        <  8:168473/115‑1 (MQ=255)                                                                                                                           cgacgaCAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTa                                                        >  7:168473/1‑115 (MQ=255)                                                                                                                                acAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCttt                 <  1:334149/149‑1 (MQ=255)                                                                                                                                      ttCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATAGCTTTCTTcgc           >  4:330979/1‑149 (MQ=255)                                                                                                                                        cTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGAcgctgtagaagtctgtcgtcgagcgtgtgcgacgcgccgcccaccaggtgatgcacaaggtgaacagcacgaaca         <  1:124501‑M2/149‑76 (MQ=255)                                                                                                                                          aCAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGAcgctgtagaagtctgtcgtcgagcgtgtgcgacgcgccgcccaccaggtgatgcacaaggtgaagagcacgaacac        <  6:310351‑M2/148‑77 (MQ=255)                                                                                                                                           cAGCGtcgaggcggacatgtagtccccggccagcgccaggccgttctgccagccctggatgccgccaccggcgctgtagaagtctgtcgtcgagcgtgtgcgacgcgccgcccaccaggtgatgcacaaggtgaacagcacgaacacca      <  5:291558‑M1/149‑145 (MQ=255)                                                                                                                                           cAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGAcgctgtagaagtctgtcgtcgagcgtgtgcgacgcgccgcccaccaggtgatgcacaaggtgaacagcacgaacacca      <  4:294816‑M2/149‑79 (MQ=255)                                                                                                                                            aGCGtcgaggcggacatgtagtccccggccagcgccaggccgttctgccagccctggatgccgccaccggcgctgtagaagtctgtcgtcgagcgtgtgcgacgcgccgcccaccaggtgatgcacaaggtgaacagcacgaacaccat     >  6:185341‑M1/1‑4 (MQ=255)                                                                                                                                             gCGtcgaggcggacatgtagtccccggccagcgccaggccgttctgccagccctggatgccgccaccggcgctgtagaagtctgtcgtcgagcgtgtgcgacgcgccgcccaccaggtgatgcacaaggtgaacagcacgaacaccatg    <  4:34565‑M1/149‑147 (MQ=255)                                                                                                                                               gcCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCTTTCTTCGCGGGCTGGcc  <  1:190358/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                     GGCTTCGCCTTCGCTCGACGCTGGTCAGCGTCAGCCGCTCAACCTGCATGCCATCGGCATGTTCATGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCTTTCTTCGCGGGCTGGCC  >  NC_002947/3186435‑3186725

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.