New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 318657745 (0.760)4 (0.070) 4/244 NT 8.0% coding (193/1659 nt) actP‑II acetate permease
?NC_002947 = 3186643 49 (0.870)coding (259/1659 nt) actP‑II acetate permease

CATGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCTTTCTTCGCGGGCTGGCCGGTGTTGCTGCTGTTGATGACCGAGCGGCTGCGCAACCTGGGCCGCTTCACCTTTGCCGATA  >  NC_002947/3186498‑3186787
                                                                                                                                                  |                                                                                                                                                
cATGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGAcgc                                                                                                                                               <  4:34565‑M2/149‑4 (MQ=255)
 aTGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGAcgct                                                                                                                                              >  6:185341‑M2/1‑145 (MQ=255)
  tGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGAcgctg                                                                                                                                             <  5:291558‑M2/149‑6 (MQ=255)
    gtgtTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGtt                                                                                                                                           >  8:309579/1‑149 (MQ=255)
      gtTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTgg                                                                                                                                         <  6:291558/149‑1 (MQ=255)
       ttCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTggg                                                                                                                                        <  6:356637/149‑1 (MQ=255)
          gTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGAt                                                                                                                                     >  5:232995/1‑149 (MQ=255)
                 tCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTAGATGTCCGCCTCGACGCTGTTGGGGATCa                                                                                                                                   <  1:214336/144‑1 (MQ=255)
                 tCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCa                                                                                                                                   >  2:214336/1‑144 (MQ=255)
                        gtgCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATc                                                                                                                        <  7:98852/148‑1 (MQ=255)
                           cATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTaca                                                                                                                    >  2:36201/1‑149 (MQ=255)
                           cATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTac                                                                                                                     <  3:34565/148‑1 (MQ=255)
                                 cTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCg                                                                                                              >  5:178124/1‑149 (MQ=255)
                                     tggGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCat                                                                                                          <  7:309579/149‑1 (MQ=255)
                                          ggcgCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTTGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCatggatg                                                                                                     <  8:271925/149‑1 (MQ=255)
                                           gcgcGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCatggatgg                                                                                                    >  4:374600/1‑149 (MQ=255)
                                             gcgTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCt                                                                                                  <  5:180632/149‑1 (MQ=255)
                                                        gCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCt                                                                                        >  2:334149/1‑148 (MQ=255)
                                                        gCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCt                                                                                        >  2:190358/1‑148 (MQ=255)
                                                           cgacgaCAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTa                                                                                                                      >  3:132084/1‑115 (MQ=255)
                                                           cgacgaCAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTa                                                                                                                      <  8:168473/115‑1 (MQ=255)
                                                           cgacgaCAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTa                                                                                                                      <  4:132084/115‑1 (MQ=255)
                                                           cgacgaCAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTa                                                                                                                      >  7:168473/1‑115 (MQ=255)
                                                                acAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCttt                                                                               <  1:334149/149‑1 (MQ=255)
                                                                      ttCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATAGCTTTCTTcgc                                                                         >  4:330979/1‑149 (MQ=255)
                                                                        cTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGAcgctgtagaagtctgtcgtcgagcgtgtgcgacgcgccgcccaccaggtgatgcacaaggtgaacagcacgaaca                                                                       <  1:124501‑M2/149‑76 (MQ=255)
                                                                          aCAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGAcgctgtagaagtctgtcgtcgagcgtgtgcgacgcgccgcccaccaggtgatgcacaaggtgaagagcacgaacac                                                                      <  6:310351‑M2/148‑77 (MQ=255)
                                                                           cAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGAcgctgtagaagtctgtcgtcgagcgtgtgcgacgcgccgcccaccaggtgatgcacaaggtgaacagcacgaacacca                                                                    <  4:294816‑M2/149‑79 (MQ=255)
                                                                               gcCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCTTTCTTCGCGGGCTGGcc                                                                <  1:190358/149‑1 (MQ=255)
                                                                                ccGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCTTTCTTCGCGGGCTGGCCg                                                               <  1:36201/149‑1 (MQ=255)
                                                                                   gTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCTTTCTTCGCGGGCTGGCCGgtg                                                            >  8:125522/1‑149 (MQ=255)
                                                                                        ggcATCCAGGGCTGGCAGAACGGCACTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCTTTCTTCGCGGGCTGGCCGGTGTtgg                                                        >  7:237524/1‑148 (MQ=255)
                                                                                        ggcATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCTTTCTTCGCGGGCTGGCCGGTGTtgct                                                       <  6:178124/149‑1 (MQ=255)
                                                                                         gcATCCAGGGCTGGGTGATCGGCGTGGCGCTGGGCGGGGACTACATGTCCGCGTCGAGGCTGTTGGGGATCACCGCACTCATCTACACCTCGGGCATGGTTGGCTTCATCTACCTGATCGCTTTCTTGGCGGGCTGGCCGgtg                                                            <  7:103593/143‑1 (MQ=255)
                                                                                         gcATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCAGTTGGGCATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCCCTTTCTTCGCGTGCTGGCCGgtg                                                            >  8:103593/1‑143 (MQ=255)
                                                                                            tCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCTTTCTTCGCGGGCTGGCCGGTGTTGctgctg                                                   >  6:77289/1‑149 (MQ=255)
                                                                                              cAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCGCCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCTTTCTTCGCGGGCTGGCCGGTGTTGCTGCTGtt                                                 >  7:170729/1‑149 (MQ=255)
                                                                                                gggCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCTTTCTTCGCGGGCTGGCCGGTGTTGCTGCTGTtga                                               <  7:125522/149‑1 (MQ=255)
                                                                                                  gCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCTTTCTTCGCGGGCTGGCCGgt                                                             <  2:354883/133‑1 (MQ=255)
                                                                                                  gCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCTTTCTTCGCGGGCTGGCCGgt                                                             >  1:354883/1‑133 (MQ=255)
                                                                                                   cTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGTCGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCTTTCTTCGCGGGCTGGCCGGTGTTGCTGCTGTtgatga                                            <  5:122271/149‑1 (MQ=255)
                                                                                                     ggCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTTCATCTACCTCATCGCTTTCTTCGCGGGCTGGCCGGTGTTGCTGCTGTTGATGAcc                                          >  4:67645/1‑149 (MQ=255)
                                                                                                      gCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCTttcttc                                                                           >  3:73857/1‑115 (MQ=255)
                                                                                                      gCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCTttcttc                                                                           <  4:73857/115‑1 (MQ=255)
                                                                                                      gCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCTTTCTTCGCGGGCTGGCCGgt                                                             >  7:334070/1‑129 (MQ=255)
                                                                                                      gCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCTTTCTTCGCGGGCTGGCCGgt                                                             <  8:334070/129‑1 (MQ=255)
                                                                                                        aGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCTTTCTTCGCGGGCTGGCCGGTGTTGCTGCTGTTGATGACCGAg                                       >  6:37013/1‑149 (MQ=255)
                                                                                                          aaCGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCTTTCTTCGCGGGCTGGCCGGTGTTGCTGCTGTTGATGACCGAGCg                                     <  5:77289/149‑1 (MQ=255)
                                                                                                               ccTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCTTTCTTCGCGGGCTGGCCGGTGTTGCTGCTGTTGATGACCGAGCGGCTgc                                <  6:232995/149‑1 (MQ=255)
                                                                                                                 cTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCt                                                                                 >  6:229976/1‑99 (MQ=255)
                                                                                                                 cTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCt                                                                                 <  5:229976/99‑1 (MQ=255)
                                                                                                                     cgcTGGCCGGGGACTACATGTCCGCCTCGACGCTTTTTGTGATCACAGCACTCATCTACACCTCAGGCATGGATGGGTACTTCTAACTCATCGCTTTCTTCGCGGGCTGGCCGGTGTTGCTGCTGTtgat                                              <  2:323869/130‑1 (MQ=255)
                                                                                                                          gCCGGGGACTACATGTCCGCCTCGAcgctgtagaagtctgtcgtcgagcgtgtgcgacgcgccgcccaccaggtgatgcacaaggtgaacagcacgaacaccatgaacatgccgatggcatgcaggttgagcggctgacgctgaccagc                      >  2:124501‑M2/1‑25 (MQ=255)
                                                                                                                          gCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCTTTCTTCGCGGGCTGGCCGGTGTTGCTGCTGTTGATGACCGAGCGGCTGCGCAACCTgg                       <  3:374600/148‑1 (MQ=255)
                                                                                                                           ccGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCTTTCTTCGCGGGCTGGCCGGTGTTGCTGCTGTTGATGACCGAGCGGCTGCGCAACCTGGGc                     <  1:170088/149‑1 (MQ=255)
                                                                                                                           ccGGGGACTACATGTCCGCCTAGACTCTGTTGGGGATCACCGCAGTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCTTTCTTCGCGGGCTGGCCGGTGTTGCTGCTGTTGATGACCGAGCGGCTGCGCAACCTGGGc                     <  8:237524/149‑1 (MQ=255)
                                                                                                                            cGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCTTTCTTcgc                                                                         >  4:252061/1‑96 (MQ=255)
                                                                                                                                    aCATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCTTTCTTCGCGGGCTGGCCGGTGTTGCTGCTGTTGATGACCGAGCGGCTGCGCAACCTGGGCCGCTTCAcc            >  2:304178/1‑149 (MQ=255)
                                                                                                                                           cGCCTCGACTCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCTTTCTTCGCGGGCTGGCCGGTGTTGCTGCTGTTGATGACCGAGCGGCTGCGCAACCTGGGCCGCTTCACCTTTGCCg     <  2:340978/149‑1 (MQ=255)
                                                                                                                                              cTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCTTTCTTCGCGGGCTGGCCGGTGTTGCTGCTGTTGATGACCGAGCGGCTGCGCAACCTGGGCCGCTTCACCTTTGCCGata  <  5:37013/149‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                
CATGGTGTTCGTGCTGTTCACCTTGTGCATCACCTGGTGGGCGGCGCGTCGCACACGCTCGACGACAGACTTCTACAGCGCCGGTGGCGGCATCCAGGGCTGGCAGAACGGCCTGGCGCTGGCCGGGGACTACATGTCCGCCTCGACGCTGTTGGGGATCACCGCACTCATCTACACCTCCGGCATGGATGGCTACATCTACCTCATCGCTTTCTTCGCGGGCTGGCCGGTGTTGCTGCTGTTGATGACCGAGCGGCTGCGCAACCTGGGCCGCTTCACCTTTGCCGATA  >  NC_002947/3186498‑3186787

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.