New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3491028 =	47 (0.800)	4 (0.070)	4/242	NT	9.2%	coding (363/2637 nt)	clpV	protein ClpV1
	?	NC_002947	3491058 =	35 (0.630)					coding (333/2637 nt)	clpV	protein ClpV1

GGACTCGGCGCTACCCTCCACCAGCGCGGCAAGGTTCAGGCGCAGGTCATCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGA  >  NC_002947/3490881‑3491173                                                                                                                                                    |                                                                                                                                                  ctggcgccgatcctgcgccactaccaggtcgtcgccgaacgcctgcaagcgcagctggtcaccgccctgggcaccttcaagaaaggtaatacccgcaccccggcgctgtcgccgcacattacccgcatgatcgagcaagcctggttgCt                                                                                                                                                  >  8:240857‑M1/148‑149 (MQ=255) ctggcgccgatcctgcgccactaccaggtcgtcgccgaacgcctgcaagcgcagctggtcacagccctgggcaccttcaagaaaggtaatacccgcaccccggcgctgtcgccgcacattacccgcatgatcgagcaagcctggttgCt                                                                                                                                                  <  4:324424‑M1/2‑1 (MQ=255)  tggcgccgatcctgcgccactaccaggtcgtcgccgaacgcctgcaagcgcagctggtcaccgccctgggcaccttcaagaaaggtaatacccgcaccccggcgctgtcgccgcacattacccgcatgatcgagcaagcctggttgCTg                                                                                                                                                 <  2:370368‑M1/3‑1 (MQ=255)  gACTCGGCGCTACCCTCCACCAGCGCGGCAAGGTTCAGGCGCAGGTCATCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTg                                                                                                                                                 <  5:14737/149‑1 (MQ=255)  gACTCGGCGCTACCCTCCACCAGCGCGGCAAGGTTCAGGCGCAGGTCATCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTg                                                                                                                                                 >  4:239876/1‑149 (MQ=255)    cTCGGCGCTACCCTCCACCAGCGCGGCAAGGTTCAGGCGCAGGTCATCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGc                                                                                                                                               <  4:134713/149‑1 (MQ=255)     tCGGCGCTACCCTCCACCAGCGCGGCAAGGTTCAGGCGCAGGTCATCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGcc                                                                                                                                              >  5:187602/1‑149 (MQ=255)       ggCGCTACCCTCCACCAGCGCGGCAAGGTTCAGGCGCAGGTCATCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTa                                                                                                                                            <  6:260095/149‑1 (MQ=255)        gcgcTACCCTCCACCAGCGCGGCAAGGTTCAGGCGCAGGTCATCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTAc                                                                                                                                           >  6:301287/1‑149 (MQ=255)              cccTCCACCAGCGCGGCAAGGTTCAGGCGCAGGTCATCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTa                                                                                                                                     <  2:245126/149‑1 (MQ=255)               ccTCCACCAGCGCGGCAAGGTTCAGGCGCAGGTCATCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTACGCACCTGGCCTACGCCGTAt                                                                                                                                    <  4:255475/149‑1 (MQ=255)                cTCCACCAGCGCGGCAAGGTTCAGGCGCAGGTCATCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTAtt                                                                                                                                   >  4:32240/1‑149 (MQ=255)                       aGCGCGGCAAGGTTCAGGCGCAGGTCATCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATtcgatc                                                                                                                              >  3:324424/1‑147 (MQ=255)                        gcgcGGCAAGGTTCAGGCGCAGGTCATCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAg                                                                                                                           >  2:85129/1‑149 (MQ=255)                            ggCAAGGTTCAGGCGCAGGTCATCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCa                                                                                                                       <  6:187602/149‑1 (MQ=255)                            ggCAAGGTTCAGGCGCAGGTCATCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCa                                                                                                                       <  2:106722/149‑1 (MQ=255)                            ggCAAGGTTCAGGCGCAGGTCATCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCa                                                                                                                       <  3:358287/149‑1 (MQ=255)                                aGGTTCAGGCGCAGGTCATCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCaa                                                                                                                   <  2:219063/149‑1 (MQ=255)                                    tCAGGCGCAGGTCATCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAg                                                                                                               >  8:18351/1‑149 (MQ=255)                                      aGGCGCAGGTCATCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAgg                                                                                                              <  3:32240/148‑1 (MQ=255)                                      aGGCGCAGGTCATCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGc                                                                                                             <  7:18351/149‑1 (MQ=255)                                          gcAGGTCATCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAg                                                                                                                      >  4:150504/1‑136 (MQ=255)                                          gcAGGTCATCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAg                                                                                                                      <  3:150504/136‑1 (MQ=255)                                          gcAGGTCATCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGc                                                                                                         <  2:82069/149‑1 (MQ=255)                                                  tCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGATCGATCAt                                                                                                 >  4:92346/1‑149 (MQ=255)                                                   cGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATg                                                                                                >  7:44211/1‑149 (MQ=255)                                                    ggCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGc                                                                                               <  3:239876/149‑1 (MQ=255)                                                     gCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCg                                                                                              >  2:235877/1‑149 (MQ=255)                                                       ctggtcaccgccctgggcaccttcaagaaaggtaatacccgcaccccggcgctgtcgccgcacattacccgcatgatcgagcaagcctggttgCTGGCCTACGCCGTATTCGATCGAGGCCAGCaa                                                                                                                   >  5:260940‑M1/94‑126 (MQ=255)                                                       ctggtcaccgccctgggcaccttcaagaaaggtaatacccgcaccccggcgctgtcgccgcacattacccgcatgatcgagcaagcctggttgCTGGCCTACGCCGTATTCGATCGAGGCCAGCaa                                                                                                                   <  6:260940‑M1/33‑1 (MQ=255)                                                            ttttttCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCtt                                                                                                           <  3:286527/129‑1 (MQ=255)                                                            ttttttCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCtt                                                                                                           >  4:286527/1‑129 (MQ=255)                                                             tttttCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAAtgt                                                                                      >  5:29350/1‑149 (MQ=255)                                                                       tCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAg                                                                            >  6:172583/1‑149 (MQ=255)                                                                                       tCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGt                                                             <  8:44211/148‑1 (MQ=255)                                                                                         accacGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTgc                                                                                    >  4:97220/1‑123 (MQ=255)                                                                                            acGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTAcc                                                       >  1:245429/1‑149 (MQ=255)                                                                                             cgcgACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCt                                                      <  5:301287/149‑1 (MQ=255)                                                                                             ccgcaccccggcgctgtcgccgcacattacccgcatgatcgagcaagcctggttgCTGGCCTACGCCGTATTCGATCGAGGCCAGc                                                                                                                     >  6:195523‑M1/56‑86 (MQ=255)                                                                                             ccgcaccccggcgctgtcgccgcacattacccgcatgatcgagcaagcctggttgCTGGCCTACGCCGTATTCGATCGAGGCCAGc                                                                                                                     <  5:195523‑M1/31‑1 (MQ=255)                                                                                                 aCGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCt                                                  <  3:92346/149‑1 (MQ=255)                                                                                                    cAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGa                                               <  1:235877/149‑1 (MQ=255)                                                                                                     aGTTCAGCATCGTCAAGCAGTGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGaa                                              <  6:319788/149‑1 (MQ=255)                                                                                                     aGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGaa                                              <  2:245429/149‑1 (MQ=255)                                                                                                              tCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAg                                     >  1:370368/1‑149 (MQ=255)                                                                                                                 tCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGc                                  >  4:252160/1‑149 (MQ=255)                                                                                                                 tCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGc                                  >  1:162092/1‑149 (MQ=255)                                                                                                                   aaGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCg                                 <  5:172583/148‑1 (MQ=255)                                                                                                                      cAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTg                              >  5:204366/1‑148 (MQ=255)                                                                                                                      cAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTg                              <  6:204366/148‑1 (MQ=255)                                                                                                                                     gTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTg                      >  4:193314/1‑141 (MQ=255)                                                                                                                                     gTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTg                      <  3:193314/141‑1 (MQ=255)                                                                                                                                      tGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAg             <  3:252160/149‑1 (MQ=255)                                                                                                                                          cgcTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGt         >  6:107510/1‑149 (MQ=255)                                                                                                                                            cTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCCGCGCTTGCAGGCGTTc       <  6:29350/149‑1 (MQ=255)                                                                                                                                              gcgcACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTgcg                                                                                   >  7:84267/1‑71 (MQ=255)                                                                                                                                              gcgcACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTgcg                                                                                   <  8:84267/71‑1 (MQ=255)                                                                                                                                                 cACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGcga  <  1:85129/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  GGACTCGGCGCTACCCTCCACCAGCGCGGCAAGGTTCAGGCGCAGGTCATCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGA  >  NC_002947/3490881‑3491173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.