New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3491028 =	47 (0.800)	4 (0.070)	4/242	NT	9.2%	coding (363/2637 nt)	clpV	protein ClpV1
	?	NC_002947	3491058 =	35 (0.630)					coding (333/2637 nt)	clpV	protein ClpV1

AGGTTCAGGCGCAGGTCATCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAG  >  NC_002947/3490912‑3491204                                                                                                                                                   |                                                                                                                                                   aGGTTCAGGCGCAGGTCATCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCaa                                                                                                                                                  <  2:219063/149‑1 (MQ=255)     tCAGGCGCAGGTCATCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAg                                                                                                                                              >  8:18351/1‑149 (MQ=255)       aGGCGCAGGTCATCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAgg                                                                                                                                             <  3:32240/148‑1 (MQ=255)       aGGCGCAGGTCATCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGc                                                                                                                                            <  7:18351/149‑1 (MQ=255)           gcAGGTCATCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGc                                                                                                                                        <  2:82069/149‑1 (MQ=255)                   tCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGATCGATCAt                                                                                                                                >  4:92346/1‑149 (MQ=255)                    cGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATg                                                                                                                               >  7:44211/1‑149 (MQ=255)                     ggCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGc                                                                                                                              <  3:239876/149‑1 (MQ=255)                      gCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCg                                                                                                                             >  2:235877/1‑149 (MQ=255)                        ctggtcaccgccctgggcaccttcaagaaaggtaatacccgcaccccggcgctgtcgccgcacattacccgcatgatcgagcaagcctggttgCTGGCCTACGCCGTATTCGATCGAGGCCAGCaa                                                                                                                                                  >  5:260940‑M1/94‑126 (MQ=255)                        ctggtcaccgccctgggcaccttcaagaaaggtaatacccgcaccccggcgctgtcgccgcacattacccgcatgatcgagcaagcctggttgCTGGCCTACGCCGTATTCGATCGAGGCCAGCaa                                                                                                                                                  <  6:260940‑M1/33‑1 (MQ=255)                             ttttttCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCtt                                                                                                                                          <  3:286527/129‑1 (MQ=255)                             ttttttCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCtt                                                                                                                                          >  4:286527/1‑129 (MQ=255)                              tttttCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAAtgt                                                                                                                     >  5:29350/1‑149 (MQ=255)                                        tCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAg                                                                                                           >  6:172583/1‑149 (MQ=255)                                                        tCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGt                                                                                            <  8:44211/148‑1 (MQ=255)                                                          accacGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTgc                                                                                                                   >  4:97220/1‑123 (MQ=255)                                                             acGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTAcc                                                                                      >  1:245429/1‑149 (MQ=255)                                                              cgcgACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCt                                                                                     <  5:301287/149‑1 (MQ=255)                                                              ccgcaccccggcgctgtcgccgcacattacccgcatgatcgagcaagcctggttgCTGGCCTACGCCGTATTCGATCGAGGCCAGc                                                                                                                                                    >  6:195523‑M1/56‑86 (MQ=255)                                                              ccgcaccccggcgctgtcgccgcacattacccgcatgatcgagcaagcctggttgCTGGCCTACGCCGTATTCGATCGAGGCCAGc                                                                                                                                                    <  5:195523‑M1/31‑1 (MQ=255)                                                                  aCGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCt                                                                                 <  3:92346/149‑1 (MQ=255)                                                                     cAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGa                                                                              <  1:235877/149‑1 (MQ=255)                                                                      aGTTCAGCATCGTCAAGCAGTGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGaa                                                                             <  6:319788/149‑1 (MQ=255)                                                                      aGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGaa                                                                             <  2:245429/149‑1 (MQ=255)                                                                               tCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAg                                                                    >  1:370368/1‑149 (MQ=255)                                                                                  tCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGc                                                                 >  4:252160/1‑149 (MQ=255)                                                                                  tCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGc                                                                 >  1:162092/1‑149 (MQ=255)                                                                                    aaGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCg                                                                <  5:172583/148‑1 (MQ=255)                                                                                       cAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTg                                                             >  5:204366/1‑148 (MQ=255)                                                                                       cAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTg                                                             <  6:204366/148‑1 (MQ=255)                                                                                                      gTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTg                                                     >  4:193314/1‑141 (MQ=255)                                                                                                      gTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTg                                                     <  3:193314/141‑1 (MQ=255)                                                                                                       tGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAg                                            <  3:252160/149‑1 (MQ=255)                                                                                                           cgcTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGt                                        >  6:107510/1‑149 (MQ=255)                                                                                                             cTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCCGCGCTTGCAGGCGTTc                                      <  6:29350/149‑1 (MQ=255)                                                                                                               gcgcACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTgcg                                                                                                                  >  7:84267/1‑71 (MQ=255)                                                                                                               gcgcACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTgcg                                                                                                                  <  8:84267/71‑1 (MQ=255)                                                                                                                  ttgctggcctcgatcgaatacggcgtaggccagCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAg                                                        <  6:260940‑M2/93‑1 (MQ=255)                                                                                                                  ttgctggcctcgatcgaatacggcgtaggccagCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAg                                                        >  5:260940‑M2/34‑126 (MQ=255)                                                                                                                  cACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGcga                                 <  1:85129/149‑1 (MQ=255)                                                                                                                    gctggcctcgatcgaatacggcgtaggccagCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCgg                                                                                              >  6:195523‑M2/32‑86 (MQ=255)                                                                                                                    gctggcctcgatcgaatacggcgtaggccagCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCgg                                                                                              <  5:195523‑M2/55‑1 (MQ=255)                                                                                                                       GGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGAcc                            <  3:67837‑M1/149‑1 (MQ=255)                                                                                                                            aCGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTgg                         >  4:240118/1‑147 (MQ=255)                                                                                                                                       gatcgaGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCa                                             >  6:227768/1‑116 (MQ=255)                                                                                                                                       gatcgaGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCa                                             <  5:227768/116‑1 (MQ=255)                                                                                                                                           gaGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCgg        <  5:107510/149‑1 (MQ=255)                                                                                                                                                cagCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCa   <  2:370368‑M2/146‑1 (MQ=255)                                                                                                                                                 agCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCTGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAg  <  4:324424‑M2/147‑1 (MQ=255)                                                                                                                                                 agCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAg  >  8:240857‑M2/3‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                   AGGTTCAGGCGCAGGTCATCGGCGTTGATTTTTTCCAGCTCCGGTGCCGAGGCGATCACCACGCGACGCAGTTCAGCATCGTCAAGCAGAGCCTGCAGCAGGTGAGCGCTGCGCACCTGGCCTACGCCGTATTCGATCGAGGCCAGCAACCAGGCTTGCTCGATCATGCGGGTAATGTGCGGCGACAGCGCCGGGGTGCGGGTATTACCTTTCTTGAAGGTGCCCAGGGCGGTGACCAGCTGCGCTTGCAGGCGTTCGGCGACGACCTGGTAGTGGCGCAGGATCGGCGCCAG  >  NC_002947/3490912‑3491204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.