| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3672982 | 42 (0.710) | 3 (0.050) | 3/240 | NT | 6.3% | coding (30/891 nt) | PP_3237 | universal stress protein family protein |
| ? | NC_002947 | = 3673037 | 50 (0.900) | coding (85/891 nt) | PP_3237 | universal stress protein family protein | |||||
CAAGGGCGGCATGAACTGGATGCTGGCAGCAGCAGTCAATCACTGCCCGCCGAAAGCCCCCTCTCGATGCAACCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCAGCTTGCACATTGTCGCCTTGCTCGAAGCACTGGACAAACTCTGGCTACTGGAGTCCGGTAAGCACCAAACGGAGCG > NC_002947/3672835‑3673128 | cAAGGGCGGCATGAACTGGATGCTGGCAGCAGCAGTCAATCACTGCCCGCCGAAAGCCCCCTCTCGATGCAACCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCa > 7:68048/1‑149 (MQ=255) gggCGGCATGAACTGGATGCTGGCAGCAGCAGTCAATCACTGCCCGCCGAAAGCCCCCTCTCGATGCAACCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATgc < 3:186185/149‑1 (MQ=255) cggcATGAACTGGATGCTGGCAGCAGCAGTCAATCACTGCCCGCCGAAAGCCCCCTCTCGATGCAACCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGcc < 5:320194/149‑1 (MQ=255) gAACTGGATGCTGGCAGCAGCAGTCAATCACTGCCCGCCGAAAGCCCCCTCTCGATGCAACCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAAtgc > 2:335791/1‑149 (MQ=255) gATGCTGGCAGCAGCAGTCAATCACTGCCCGCCGAAAGCCCCCTCTCGATGCAACCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCa < 2:358287/147‑1 (MQ=255) gCTGGCAGCAGCAGTCAATCACTGCCCGCCGAAAGCCCCCTCTCGATGCAACCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATC > 5:262256‑M1/1‑127 (MQ=255) gCTGGCAGCAGCAGTCAATCACTGCCCGCCGAAAGCCCCCTCTCGATGCAACCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATC < 6:262256‑M1/127‑1 (MQ=255) tGGCAGCAGCAGTCAATCACTGCCCGCCGAAAGCCCCCTCTCGATGCAACCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCg > 2:101418/1‑149 (MQ=255) agcagcagTCAATCACTGCCCGCCGAAAGCCCCCTCTCGATGCAACCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCg > 4:27528/1‑149 (MQ=255) agcagcagTCAATCACTGCCCGCCGAAAGCCCCCTCTCGATGCAACCCGAGCGACCTGAGTGATCAGGCCGACCCACCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCg < 7:4295/149‑1 (MQ=255) aaTCACTGCCCGCCGAAAGCCCCCTCTCGATGCAACCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTAGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCa > 4:56103/1‑149 (MQ=255) gAAAGCCCCCTCTCGATGCAACCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATTCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTgg < 5:208004/149‑1 (MQ=255) ccccTCTCGATGCAACCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCgat > 4:208567‑M2/1‑146 (MQ=255) cccTCTCGATGCAACCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCgat < 4:32709‑M2/148‑4 (MQ=255) ctctCGATGCAACCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCgatcag < 2:134875‑M2/149‑7 (MQ=255) tctcGATGCAACCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCgatcag < 1:178102‑M2/148‑7 (MQ=255) gATGCAACCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCgggccagtgcaccggcctgctccagggcgaccgcctggtgcagcattgggcgcatgatcagcaa < 4:324923‑M1/147‑65 (MQ=255) gATGCAACCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCg > 7:86423/1‑149 (MQ=255) cAACCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCa < 1:335791/149‑1 (MQ=255) aaCCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCAg > 8:192279/1‑149 (MQ=255) aCCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCAGc > 5:128574/1‑149 (MQ=255) tGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATCGATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATc > 1:248034/1‑131 (MQ=255) tGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATc < 2:248034/130‑1 (MQ=255) gAGTGATCAGGCCGGCCCACCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGc > 7:263376/1‑117 (MQ=255) gAGTGATCAGGCCGGCCCACCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGc < 8:263376/117‑1 (MQ=255) tGATCAGGCCGGCCCACCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCAGCTTGCACATTGTCGCCt < 3:32709/149‑1 (MQ=255) tCAGGCCGGCCCACCGTTGGAGATAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGCGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCAGCTTGCACATTGTCGCCTTGc > 1:50445/1‑149 (MQ=255) gccggccCACCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCAGCTTGCACATTGTCGCCTTGCTCg > 4:170504/1‑148 (MQ=255) ccggccCACCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCAGCTTGCACATTGTCGCCTTGCTCGaa < 1:134875/149‑1 (MQ=255) gccCACCGTTGGAGGTTATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCCGCTTGAAAATTGTCGCCGTGGTAGACGCa > 4:310149/1‑149 (MQ=255) ccACCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCgggccagtgcaccggcctgctccagggcgaccgcctggtgcagcattgggcgcatgatc > 4:264085‑M1/1‑48 (MQ=255) ccACCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCgggccagtgcaccggcctgctccagggcgaccgcctggtgcagcattgggcgcatgatc < 3:264085‑M1/107‑60 (MQ=255) aCCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCAGCTTGCACATTGTCGCCTTGCTCGAAGCACTg < 8:218022/148‑1 (MQ=255) aCCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCAGCTTGCACATTGTCGCCTTGCTCGAAGCACTg > 7:218022/1‑148 (MQ=255) ggAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCAGCTTGcaca < 2:211374/119‑1 (MQ=255) ggAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCAGCTTGCACATTGTCGCCTTGCTCGAAGCACTGGACaaa < 6:128574/148‑1 (MQ=255) gTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCAGCTTGCACATTGTCGCCTTGCTCGAAGCACTGGACAAACTCTg < 6:70125/149‑1 (MQ=255) tAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCAGCTTGCACATTGTCGCCTTGCTCGAAGCACTGGACAAACTCTgg < 3:27528/149‑1 (MQ=255) aaTC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCAGCTTGCACATTGTCGCCTTGCTCGAAGCACTGGACAAACTCTGGc > 4:188043/1‑149 (MQ=255) tC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCAGCTTGCACATTGTCGCCTTGCTCGAAGCACTGGACAAActct > 6:157824/1‑144 (MQ=255) tC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCAGCTTGCACATTGTCGCCTTGCTCGAAGCACTGGACAAActct < 5:157824/144‑1 (MQ=255) tGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCTCTGGCCCGATCAGCATCGGCCAGCTTGCACATTGTCGCCTTGCTCGAAGCACTGGACAAACTCTGGCTACTg < 3:56103/149‑1 (MQ=255) tGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCAGCTTGCACATTGTCGCCTTGCTCGAAGCACTGGACAAACTCTGGCTACTg > 3:221329/1‑149 (MQ=255) gAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCCCCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCAGCTTGCCCATTGTCGCCTTGCTCGAAGCACTGGACAAACTCTGGCTACTg > 8:237541/1‑148 (MQ=255) aGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCAGCTTGCACATTGTCGCCTTGCTCGAAGCACTGGACAAACTCTGGCTACTGGa < 7:192279/149‑1 (MQ=255) aaCGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCAGCTTGca > 2:265386/1‑94 (MQ=255) aaCGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCAGCTTGca < 1:265386/94‑1 (MQ=255) aaCGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCAGCTTGCACATTGTCGCCTTGCTCGAAGCACTGGACAAACTCTGGCTACTGGAGTCCGGTAAg < 8:86423/149‑1 (MQ=255) cTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCAGCTTGCACATTGTCGCCTTGCTCGAAGCACTGGACAAACTCTGGCTACTg > 3:315162/1‑132 (MQ=255) cTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCAGCTTGCACATTGTCGCCTTGCTCGAAGCACTGGACAAACTCTGGCTACTg < 4:315162/132‑1 (MQ=255) gTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCAGCTTGCACATTGTCGCCTTGCTCGAAGCACTGGACAAACTCTGGCTACTGGAGTCCgg < 3:266673/138‑1 (MQ=255) gTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCAGCTTGCACATTGTCGCCTTGCTCGAAGCACTGGACAAACTCTGGCTACTGGAGTCCgg > 4:266673/1‑138 (MQ=255) ttGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCgatcagcaacaggcgttgatagtggctcatgattacctccaacggtgggccggcctgatcactcaggtcgctcgggttgcatc < 4:324923‑M2/147‑84 (MQ=255) cTGATCgggccagtgcaccggcctgctccagggcgaccgcctggtgcagcattgggcgcatgatcagcaacaggcgttgatagtggctcatgattacctccaacggtgggccggcctgatcactcaggtcgctcgggttgcatcgagag < 2:134875‑M1/149‑144 (MQ=255) cTGATCgggccagtgcaccggcctgctccagggcgaccgcctggtgcagcattgggcgcatgatcagcaacaggcgttgatagtggctcatgattacctccaacggtgggccggcctgatcactcaggtcgctcgggttgcatcgaga < 1:178102‑M1/148‑143 (MQ=255) cTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCAGCTTGCACATTGTCGCCTTGCTCGAAGCACTGGACAAACTCTGGCTACTGGAGTCCGGTAAGCACCAAACGGa < 2:50445/149‑1 (MQ=255) gATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCgatcagcaacaggcgttgatagtggctcatgattacctccaacggtgg < 3:264085‑M2/107‑49 (MQ=255) gATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCgatcagcaacaggcgttgatagtggctcatgattacctccaacggtgg > 4:264085‑M2/1‑59 (MQ=255) aTCgggccagtgcaccggcctgctccagggcgaccgcctggtgcagcattgggcgcatgatcagcaacaggcgttgatagtggctcatgattacctccaacggtgggccggcctgatcactcaggtcgctcgggttgcatcgagagggg > 4:208567‑M1/1‑3 (MQ=255) aTCgggccagtgcaccggcctgctccagggcgaccgcctggtgcagcattgggcgcatgatcagcaacaggcgttgatagtggctcatgattacctccaacggtgggccggcctgatcactcaggtcgctcgggttgcatcgagaggg < 4:32709‑M1/148‑146 (MQ=255) aTCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCAGCTTGCACATTGTCGCCTTGCTCGAAGCACTGGACAAACTCTGGCTACTGGAGTCCGGTAAGCACCAAACGGAg < 1:101418/147‑1 (MQ=255) | CAAGGGCGGCATGAACTGGATGCTGGCAGCAGCAGTCAATCACTGCCCGCCGAAAGCCCCCTCTCGATGCAACCCGAGCGACCTGAGTGATCAGGCCGGCCCACCGTTGGAGGTAATC‑ATGAGCCACTATCAACGCCTGTTGCTGATCATGCGCCCAATGCTGCACCAGGCGGTCGCCCTGGAGCAGGCCGGTGCACTGGCCCGATCAGCATCGGCCAGCTTGCACATTGTCGCCTTGCTCGAAGCACTGGACAAACTCTGGCTACTGGAGTCCGGTAAGCACCAAACGGAGCG > NC_002947/3672835‑3673128 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |