New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3676847 =	45 (0.760)	3 (0.050)	3/244	NT	6.7%	intergenic (‑2/‑151)	PP_3241/PP_3242	hypothetical protein/GGDEF domain‑containing protein
	?	NC_002947	3676903 =	40 (0.710)					intergenic (‑58/‑95)	PP_3241/PP_3242	hypothetical protein/GGDEF domain‑containing protein

CTGAGCCAGCTTGCCGGTCACCACTTCGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAA‑AACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTC  >  NC_002947/3676699‑3676995                                                                                                                                                      |                                                                                                                                                     cTGAGCCAGCTTGCCGGTCACCACTTCGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAA‑AACCAACGCGTCTGATGAAGAGACTATTCATGc                                                                                                                                                      >  2:274523/1‑149 (MQ=255)    gccactgatggcgaaaagcccatcgtcgtcctgtttcctggctgcgcacattggaatccctggccctacggcgttcgccgtcttcactatagttcagcgtcgcacggccggaaccggcggcaaaaaagattaaaccttttccccgcCt                                                                                                                                                     <  8:337755‑M1/2‑1 (MQ=255)      ccAGCTTGCCGGTCACCACTTCGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAA‑AACCAACGCGTCTGATGAAGAGACTATTCATGCTTCAc                                                                                                                                                 >  5:181094/1‑149 (MQ=255)             gCCGGTCACCACTTCGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGTTGGCAGGCCCAACACCATGGAAA‑AACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCtt                                                                                                                                            <  7:227619/147‑1 (MQ=255)             gCCGGTCACCACTTCGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAA‑AACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCttt                                                                                                                                           >  3:321504/1‑148 (MQ=255)             gCCGGTCACCACTTCGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAA‑AACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCtt                                                                                                                                            <  3:39452/147‑1 (MQ=255)                ggTCACCACTTCGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAACAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTaaa                                                                                                                                        <  1:274523/149‑1 (MQ=255)                     ccacTTCGGCAATGCCGGCCTCGGAGGATGCATCGACGAAATCATCGGAAGTCGCGGACATTACGTGCACCGATGCCAGGACCAACACCATGGAAA‑AACCAACGCGTCTGATGAAGAGACTATACATGCTTCACGCCTTTAAAACGTgg                                                                                                                                  >  7:56302/1‑149 (MQ=255)                         ttCGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAA‑AACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGgcgc                                                                                                                               >  6:248947/1‑148 (MQ=255)                         ttCGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAA‑AACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGcgcg                                                                                                                              >  5:348041/1‑149 (MQ=255)                                 tGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAA‑AACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAAt                                                                                                                      <  6:136469/149‑1 (MQ=255)                                                   cctCGACGAAATCATCGGAAGGCGCGGCCATTGCGTGCCCCGATTCCAGGCCCAACACCATGGAAA‑AACCAACGCGTCTGTTGAAGAGACTTTTCATGCTTCACTCCTTTTAACTGTTGCGCGACTTCAATGTCGCGTATGGTTGAgg                                                                                                     <  8:56302/146‑1 (MQ=255)                                                   cATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAA‑AACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAgg                                                                                                     <  1:164348/148‑1 (MQ=255)                                                   cATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAA‑AACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAgg                                                                                                     <  3:343676/148‑1 (MQ=255)                                                     tCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAA‑AACCAACGCGGCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTg                                                                                                  <  3:86319/149‑1 (MQ=255)                                                       gacgaAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAA‑AACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGaa                                                                                                <  5:248947/149‑1 (MQ=255)                                                        acgaAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAA‑AACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAg                                                                                               >  8:154941/1‑149 (MQ=255)                                                         cgaAATCATGGTAATTCGCGGCCATTGCGTGCACCGATGCCATGCCCAACACCATGGAAA‑AAGAAACGCTTCTGATGAAGAGACTATTCATGCTTCACTCCtt                                                                                                                                            <  1:137451/103‑1 (MQ=255)                                                         cgaAATAATCGGAAGTCGCGGCCATTGCGTGCACCGATGACAGGCCCAACACCATGGAAA‑AACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTACtt                                                                                                                                            >  2:137451/1‑103 (MQ=255)                                                           aaaTCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAA‑AACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCg                                                                                            <  2:358033/149‑1 (MQ=255)                                                              tcatcGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAA‑AACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCggg                                                                                          >  3:28626/1‑148 (MQ=255)                                                               ctggccctacggcgttcgccgtcttcactatagttcagcgtcgcacggccggaaccggcggcaaaaaagattaaaccttttccccgcCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCgggg                                                                                         >  8:4405‑M1/88‑149 (MQ=255)                                                                 tcGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAA‑AACCAACGCGTCTGATGAAGAGGCTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGaa                                                                                       >  7:342329/1‑148 (MQ=255)                                                                       gTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAA‑AACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGttt                                                                                <  6:181094/149‑1 (MQ=255)                                                                        tCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAGAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGa                                                                                                       >  1:78595/1‑126 (MQ=255)                                                                        tCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAA‑AACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGa                                                                                                       <  2:78595/125‑1 (MQ=255)                                                                                           cGATGCCAGGCCCAACACCATGGAAA‑AACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGCTGAAGGCGGCAAAAAAGATTAAACCTTTTCcccgccttca                                                            <  5:68790/149‑5 (MQ=38)                                                                                            gATGCCAGGCCCAACACCATGGAAA‑AACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGCAAAAAAGATTAAACCTTTTCcccgccttcac                                                           <  1:119188/149‑6 (MQ=38)                                                                                               gCCAGGCCCAACACCATGGAAA‑AACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCgg                                                        <  4:292035/149‑1 (MQ=255)                                                                                                  cagcgtcgcacggccggaaccggcggcaaaaaagattaaaccttttccccgcCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGtt                                                                                 >  1:231920‑M1/53‑122 (MQ=255)                                                                                                  cagcgtcgcacggccggaaccggcggcaaaaaagattaaaccttttccccgcCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGtt                                                                                 <  2:231920‑M1/70‑1 (MQ=255)                                                                                                      ccAACACCATGGAAA‑AACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCg                                                         <  5:180616/141‑1 (MQ=255)                                                                                                      ccAACACCATGGAAA‑AACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCg                                                         >  6:180616/1‑141 (MQ=255)                                                                                                       cAACACCATGGAAA‑AACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGa                                                >  3:38652/1‑149 (MQ=255)                                                                                                              aTGGAAA‑AACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGaa                                         <  7:154941/149‑1 (MQ=255)                                                                                                                ggAAA‑AACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCgg                                                        >  1:356354/1‑132 (MQ=255)                                                                                                                ggAAA‑AACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCgg                                                        <  2:356354/132‑1 (MQ=255)                                                                                                                       aCCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGt                                  >  2:346823/1‑148 (MQ=255)                                                                                                                         cAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGt                                  >  6:172290/1‑146 (MQ=255)                                                                                                                         cAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGt                                  <  5:172290/146‑1 (MQ=255)                                                                                                                         cAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGaa                               <  4:38652/149‑1 (MQ=255)                                                                                                                          aaCGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTg                                 >  5:211090/1‑146 (MQ=255)                                                                                                                                   gatgaAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCTGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAAc                     >  4:98593/1‑149 (MQ=255)                                                                                                                                   gatgaAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGt                                  <  6:150856/136‑1 (MQ=255)                                                                                                                                   gatgaAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGt                                  >  5:150856/1‑136 (MQ=255)                                                                                                                                    atgaAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGAGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACg                    >  6:123748/1‑149 (MQ=255)                                                                                                                                         gagaCTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGaa                                         <  6:217967/123‑1 (MQ=255)                                                                                                                                         gagaCTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTa               <  6:348041/149‑1 (MQ=255)                                                                                                                                               aTTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGc           >  7:337755/1‑147 (MQ=255)                                                                                                                                               aTTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTCAACTATAGTGAAGACGCCGAACCCCGTAGGGc           >  4:115976/1‑147 (MQ=255)                                                                                                                                                  cATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAgg       <  6:211090/148‑1 (MQ=255)                                                                                                                                                      CTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTc  >  8:342329‑M1/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                     CTGAGCCAGCTTGCCGGTCACCACTTCGGCAATGCCGGCCTCGGTGGCTGCATCGACGAAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAA‑AACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTC  >  NC_002947/3676699‑3676995

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.