| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3676847 = | 45 (0.760) | 3 (0.050) | 3/244 | NT | 6.7% | intergenic (‑2/‑151) | PP_3241/PP_3242 | hypothetical protein/GGDEF domain‑containing protein |
| ? | NC_002947 | 3676903 = | 40 (0.710) | intergenic (‑58/‑95) | PP_3241/PP_3242 | hypothetical protein/GGDEF domain‑containing protein | |||||
AAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAATGTGCGCAGCCAGGAAACAGGACGACGATGGGCTTTTCGCCATCAGTGGC > NC_002947/3676757‑3677048 | aaaTCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCg < 2:358033/149‑1 (MQ=255) tcatcGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCggg > 3:28626/1‑148 (MQ=255) ctggccctacggcgttcgccgtcttcactatagttcagcgtcgcacggccggaaccggcggcaaaaaagattaaaccttttccccgcCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCgggg > 8:4405‑M1/88‑149 (MQ=255) tcGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGGCTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGaa > 7:342329/1‑148 (MQ=255) gTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGttt < 6:181094/149‑1 (MQ=255) cGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGCTGAAGGCGGCAAAAAAGATTAAACCTTTTCcccgccttca < 5:68790/149‑5 (MQ=38) gATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGCAAAAAAGATTAAACCTTTTCcccgccttcac < 1:119188/149‑6 (MQ=38) gCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCgg < 4:292035/149‑1 (MQ=255) cagcgtcgcacggccggaaccggcggcaaaaaagattaaaccttttccccgcCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGtt > 1:231920‑M1/53‑122 (MQ=255) cagcgtcgcacggccggaaccggcggcaaaaaagattaaaccttttccccgcCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGtt < 2:231920‑M1/70‑1 (MQ=255) ccAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCg > 6:180616/1‑141 (MQ=255) ccAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCg < 5:180616/141‑1 (MQ=255) cAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGa > 3:38652/1‑149 (MQ=255) aTGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGaa < 7:154941/149‑1 (MQ=255) ggAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCgg < 2:356354/132‑1 (MQ=255) ggAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCgg > 1:356354/1‑132 (MQ=255) aCCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGt > 2:346823/1‑148 (MQ=255) cAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGt > 6:172290/1‑146 (MQ=255) cAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGt < 5:172290/146‑1 (MQ=255) cAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGaa < 4:38652/149‑1 (MQ=255) aaCGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTg > 5:211090/1‑146 (MQ=255) gatgaAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCTGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAAc > 4:98593/1‑149 (MQ=255) gatgaAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGt > 5:150856/1‑136 (MQ=255) gatgaAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGt < 6:150856/136‑1 (MQ=255) atgaAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGAGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACg > 6:123748/1‑149 (MQ=255) aaccttttccccgccttcaccctcaaccgtacgcgacattgaggtcgcgccacggtttaaaggagtgaagGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTg < 2:231920‑M2/52‑1 (MQ=255) aaccttttccccgccttcaccctcaaccgtacgcgacattgaggtcgcgccacggtttaaaggagtgaagGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTg > 1:231920‑M2/71‑122 (MQ=255) gagaCTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGaa < 6:217967/123‑1 (MQ=255) gagaCTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTa < 6:348041/149‑1 (MQ=255) aTTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGc > 7:337755/1‑147 (MQ=255) aTTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTCAACTATAGTGAAGACGCCGAACCCCGTAGGGc > 4:115976/1‑147 (MQ=255) ccccgccttcaccctcaaccgtacgcgacattgaggtcgcgccacggtttaaaggagtgaagGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAg > 8:4405‑M2/63‑149 (MQ=255) cATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAgg < 6:211090/148‑1 (MQ=255) CTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTc > 8:342329‑M1/1‑149 (MQ=255) tttAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGc < 1:134346/87‑1 (MQ=255) tttAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGc > 2:134346/1‑87 (MQ=255) tttAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAATGTgcg > 5:206469/1‑149 (MQ=255) aaaCCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCTGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAATGTGCGCa < 3:98593/148‑1 (MQ=255) gTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAAGTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAATGTGCGCAGCCAgg < 3:115976/149‑1 (MQ=255) gcgcGACCTCAACGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAATGTGCGCAGCCAGGaaa < 4:321504/149‑1 (MQ=255) aCCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAATGTGCGCAGCCAGGAAACAGga < 4:28626/149‑1 (MQ=255) tCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAATGTGCGCAGCCAGGAAACAGgacga > 6:44188/1‑149 (MQ=255) gTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACtata > 7:245969/1‑82 (MQ=255) gTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACtata < 8:245969/82‑1 (MQ=255) tCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAATGTGCGCAGCCAGGAAACAGGACGACGATg < 6:206469/148‑1 (MQ=255) gcgTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAATGTGCGCAGCCAGGAAACAGGACGACGATGGGc > 3:354327/1‑149 (MQ=255) gcgTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAATGTGCGCAGCCAGGAAACAGGACGACGATGGGc > 8:254640/1‑149 (MQ=255) gcgTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAATGTGCGCAGCCAGGAAACAGGACGACGATGGGc > 2:337103/1‑149 (MQ=255) gcgTACGGTTGAGGGAGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAATGTGCGCAGCCAGGAAACAGGACGACGATGGGc < 5:123748/149‑1 (MQ=255) gggTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAATGTGCGCAGCCAGGAAACAGGACGACGATGGGCTTTTCGCCAt > 6:356512/1‑147 (MQ=255) agGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAATGTGCGCAGCCAGGAAACAGGACGACGATGGGCTTTTCGCCATCAGTGGc < 8:337755‑M2/146‑1 (MQ=255) | AAATCATCGGAAGTCGCGGCCATTGCGTGCACCGATGCCAGGCCCAACACCATGGAAAAACCAACGCGTCTGATGAAGAGACTATTCATGCTTCACTCCTTTAAACCGTGGCGCGACCTCAATGTCGCGTACGGTTGAGGGTGAAGGCGGGGAAAAGGTTTAATCTTTTTTGCCGCCGGTTCCGGCCGTGCGACGCTGAACTATAGTGAAGACGGCGAACGCCGTAGGGCCAGGGATTCCAATGTGCGCAGCCAGGAAACAGGACGACGATGGGCTTTTCGCCATCAGTGGC > NC_002947/3676757‑3677048 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |