New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4798741	15 (0.250)	5 (0.090)	5/238	NT	23.8%	intergenic (‑79/‑162)	qseB/PP_4226	two‑component system DNA‑binding transcriptional activator QseB/hypothetical protein
	?	NC_002947	= 4798772	18 (0.330)					intergenic (‑110/‑131)	qseB/PP_4226	two‑component system DNA‑binding transcriptional activator QseB/hypothetical protein

CTGGGCGGTGAGACCGGCGCAGATGCCGGCGGCGATCAGGTCGTCGTCCTCGCAGAGCAGAACGTGCATGGTGGGGCTCCCGGTGTGGTGTGGCTGTTATTGCACCTTGGGCGGATTAAGGGGGGATTATGGACCTTTTGGGCAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCACCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGCTTCTCGAACACAACAGAAACGAAGTCGCATTTTCCTACAACCGACCCAGAAACCTCTGATCCGAATCCATGATGGGAT  >  NC_002947/4798594‑4798887                                                                                                                                                    |                                                                                                                                                   cTGGGCGGTGAGACCGGCGCAGATGCCGGCGGCGATCAGGTCGTCGTCCTCGCAGAGCAGAACGTGCAGGGTGGGGCTCCCGGTGTGGTGTGGCTGTGATTGCACCTTGGGCGGAGTAAGGGGGGAGTATGGACCTTTTGGGCAGGGtt                                                                                                                                                   >  8:157099/1‑149 (MQ=255)    ggCGGTGAGACCGGCGCAGATGCCGGCGGCGATCAGGTCGTCGTCCTCGCAGAGCAGAACGTGCATGGTGGGGCTCCCGGTGTGGTGTGGCTGTTATTGCACCTTGGGCGGATTAAGGGGGGATTATGGACCTTTTGGGCAGGGTTgg                                                                                                                                                 <  7:172659/148‑1 (MQ=255)    ggCGGTGAGACCGGCGCAGATGCCGGCGGCGATCAGGTCGTCGTCCTCGCAGAGCAGAACGTGCATGGTGGGGCTCCCGGTGTGGTGTGGCTGTTATTGCACCTTGGGCGGATTAAGGGGGGATTATGGACCTTTTGGGCAGGGTTgg                                                                                                                                                 <  4:231428/148‑1 (MQ=255)       ggTGAGACCGGCGCAGATGCCGGCGGCGATCAGGTCGTCGTCCTCGCAGAGCAGAACGTGCATGGTGGGGCTCCCGGTGTGGTGTGGCTGTTATTGCACCTTGGGCGGATTAAGGGGGGATTATGGACCTTTTGGGCAGGGTTggggg                                                                                                                                              >  3:156017/1‑148 (MQ=255)                           cggcggCGATCAGGTCGTCGTCCTCGCAGAGCAGAACGTGCATGGTGGGGCTCCCGGTGTGGTGTGGCTGTTATTGCACCTTGGGCGGATTAAGGGGGGATTATGGAGCTTTTGGGCAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGa                                                                                                                         >  5:330638/1‑149 (MQ=255)                                  gATCAGGTCGTCGTCCTCGCAGAGCAGAACGTGCATGGTGGGGCTCCCGGTGTGGTGTGGCTGTTATTGCACCTTGGGCGGATTAAGGGGGGATTATGGACCTTTTGGGCAGGGTggcgtcccgcgcggcgctcgatctccccccaacc                                                                                                                  <  5:80828‑M1/149‑35 (MQ=255)                                        gtcgtcgtcCTCGCAGAGCAGAACGTGCATGGTGGGGCTCCCGGTGTGGTGTGGCTGTTATTGCACCTTGGGCGGATTAAGGGGGGATTATGGACCTTTTGGGCAGGGTggcgtcccgcgcggcgctcgatctccccccaaccctg                                                                                                               <  4:297998‑M1/146‑38 (MQ=255)                                        gtcgtcgtcCTCGCAGAGCAGAACGTGCATGGTGGGGCTCCCGGTGTGGTGTGGCTGTTATTGCACCTTGGGCGGATTAAGGGGGGATTATGGACCTTTTGGGCAGGGTggcgtcccgcgcggcgctcgatctccccccaaccctg                                                                                                               >  3:297998‑M1/1‑109 (MQ=255)                                                  tCGCAGAGCAGAACGTGCATGGTGGGGCTCCCGGTGTGGTGTGGCTGTTATTGCACCTTGGGCGGATTAAGGGGGGATTATGGACCTTTTGGGCAGGGTggcgtcccgcgcggcgctcgatctccccccaaccctgcc                                                                                                             >  1:27816‑M1/1‑99 (MQ=255)                                                  tCGCAGAGCAGAACGTGCATGGTGGGGCTCCCGGTGTGGTGTGGCTGTTATTGCACCTTGGGCGGATTAAGGGGGGATTATGGACCTTTTGGGCAGGGTggcgtcccgcgcggcgctcgatctccccccaaccctgcc                                                                                                             <  2:27816‑M1/138‑40 (MQ=255)                                                  tCGCAGAGCAGAACGTGCATGGTGGGGCTCCCGGTGTGGTGTGGCTGTTATTGCACCTTGGGCGGATTAAGGGGGGATTATGGACCTTTTGGGCAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCACCCTGCCCCTCGCAGCCt                                                                                                  >  3:162620/1‑149 (MQ=255)                                                           agaACGTGCATGGTGGGGCTCCCGGTGTGGTGTGGCTGTTATTGCACCTTGGGCGGATTAAGGGGGGATTATGGACCTTTTGGGCAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCACCCTGCCCCTCGCAGCCTCAACCCCaa                                                                                         >  7:326064/1‑149 (MQ=255)                                                                        tggGGCTCCCGGTGTGGTGTGGCTGTTATTGCACCTTGGGCGGATTAAGGGGGGATTATGGACCTTTTGGGCAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCACCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGCTtct                                                                            >  1:185953/1‑149 (MQ=255)                                                                               cccGGTGTGGTGTGGCTGTTATTGCACCTTGGGCGGATTAAGGGGGGATTATGGACCTTTTGGGCAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCACCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGc                                                                                >  7:207609/1‑138 (MQ=255)                                                                                               tGTTATTGCACCTTGGGCGGATTAAGGGGGGATTATGGACCTTTTGGGCAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCACCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGCTtctc                                                                           >  1:51369/1‑127 (MQ=255)                                                                                                    ttGCACCTTGGGCGGATTAAGGGGGGATTATGGACCTTTTGGGCAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCCCCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGCTTCTCGAACACAACAGAAACGaa                                                         >  3:18838/1‑140 (MQ=255)                                                                                                    ttGCACCTTGGGCGGATTAAGGGGGGATTATGGACCTTTTGGGCAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCACCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGCTTCTCGAACACAACAGAAACGaa                                                         >  3:13762/1‑140 (MQ=255)                                                                                                             gggCGGATTAAGGGGGGATTATGGACCTTTTGGGCAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCACCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGCTTCTCGAACACAACAGAAACGAAGTCGCATTTTCCTACAAc                                       >  5:187233/1‑149 (MQ=255)                                                                                                                                     aCCTTTTGGGCAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCACCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGCTTCTCGAACACAACAGAAACGAAGTCGCATTTTCCTACAACCGACCCAGAAACCTCTGATACGaa               >  5:194232/1‑149 (MQ=255)                                                                                                                                       cTTTTGGGCAGGGTTGGGTGGAGATCGAGCGCCGCGCGGGACGCCACCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGCTTCTCGAACACAACAGAAACGAAGTCGCATTTTCCTACAACCGACCCAGAAACctc                        <  1:45691/138‑1 (MQ=255)                                                                                                                                       cTTTTGGGCAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCACCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGCTTCTCGAACACAACAGAAACGAAGTCGCATTTTCCTACAACCGCCCCAGAAACCTCTGATCCGAATc             >  4:243362/1‑149 (MQ=255)                                                                                                                                       cTTTTGGGCAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCACCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGCTTCTCGAACACAACAGAAACGAAGTCGCATTTTCCTACAACCGACCCAGAAACCTCTGATCCGAATc             >  2:186908/1‑149 (MQ=255)                                                                                                                                       cTTTTGGGCAGGGTTGGGAGGAGATCGAGCGCCGCGCGGGACGCCACCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGCTTCTCGAACACAACAGAAACGAAGTCGCATTTTCCTACAACCGACCCAGAAACctc                        >  2:45691/1‑138 (MQ=255)                                                                                                                                             ggCAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCaccctgcccaaaaggtccataatccccccttaatccgcccaaggtgcaataacagccacaccacaccgggagccccaccatgcacgttctgctctgcga                  >  1:27816‑M2/1‑39 (MQ=255)                                                                                                                                             ggCAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCaccctgcccaaaaggtccataatccccccttaatccgcccaaggtgcaataacagccacaccacaccgggagccccaccatgcacgttctgctctgcga                  <  2:27816‑M2/138‑100 (MQ=255)                                                                                                                                               cAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCaccctgcccaaaaggtccataatccccccttaatccgcccaaggtgcaataacagccacaccacaccgggagccccaccatgcacgttctgctctgcgaggacgacgac        <  4:297998‑M2/146‑110 (MQ=255)                                                                                                                                               cAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCaccctgcccaaaaggtccataatccccccttaatccgcccaaggtgcaataacagccacaccacaccgggagccccaccatgcacgttctgctctgcgaggacgacgac        >  3:297998‑M2/1‑37 (MQ=255)                                                                                                                                                  ggTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCaccctgcccaaaaggtccataatccccccttaatccgcccaaggtgcaataacagccacaccacaccgggagccccaccatgcacgttctgctctgcgaggacgacgacctgatc  <  5:80828‑M2/149‑116 (MQ=255)                                                                                                                                                    |                                                                                                                                                   CTGGGCGGTGAGACCGGCGCAGATGCCGGCGGCGATCAGGTCGTCGTCCTCGCAGAGCAGAACGTGCATGGTGGGGCTCCCGGTGTGGTGTGGCTGTTATTGCACCTTGGGCGGATTAAGGGGGGATTATGGACCTTTTGGGCAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCACCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGCTTCTCGAACACAACAGAAACGAAGTCGCATTTTCCTACAACCGACCCAGAAACCTCTGATCCGAATCCATGATGGGAT  >  NC_002947/4798594‑4798887

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.