| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4798741 | 15 (0.250) | 5 (0.090) | 5/238 | NT | 23.8% | intergenic (‑79/‑162) | qseB/PP_4226 | two‑component system DNA‑binding transcriptional activator QseB/hypothetical protein |
| ? | NC_002947 | = 4798772 | 18 (0.330) | intergenic (‑110/‑131) | qseB/PP_4226 | two‑component system DNA‑binding transcriptional activator QseB/hypothetical protein | |||||
TCGCAGAGCAGAACGTGCATGGTGGGGCTCCCGGTGTGGTGTGGCTGTTATTGCACCTTGGGCGGATTAAGGGGGGATTATGGACCTTTTGGGCAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCACCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGCTTCTCGAACACAACAGAAACGAAGTCGCATTTTCCTACAACCGACCCAGAAACCTCTGATCCGAATCCATGATGGGATTTCCCCCTGCACACGTTGTCAGGGAGACAC > NC_002947/4798643‑4798917 | tCGCAGAGCAGAACGTGCATGGTGGGGCTCCCGGTGTGGTGTGGCTGTTATTGCACCTTGGGCGGATTAAGGGGGGATTATGGACCTTTTGGGCAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCACCCTGCCCCTCGCAGCCt > 3:162620/1‑149 (MQ=255) agaACGTGCATGGTGGGGCTCCCGGTGTGGTGTGGCTGTTATTGCACCTTGGGCGGATTAAGGGGGGATTATGGACCTTTTGGGCAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCACCCTGCCCCTCGCAGCCTCAACCCCaa > 7:326064/1‑149 (MQ=255) tggGGCTCCCGGTGTGGTGTGGCTGTTATTGCACCTTGGGCGGATTAAGGGGGGATTATGGACCTTTTGGGCAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCACCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGCTtct > 1:185953/1‑149 (MQ=255) cccGGTGTGGTGTGGCTGTTATTGCACCTTGGGCGGATTAAGGGGGGATTATGGACCTTTTGGGCAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCACCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGc > 7:207609/1‑138 (MQ=255) tGTTATTGCACCTTGGGCGGATTAAGGGGGGATTATGGACCTTTTGGGCAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCACCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGCTtctc > 1:51369/1‑127 (MQ=255) ttGCACCTTGGGCGGATTAAGGGGGGATTATGGACCTTTTGGGCAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCCCCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGCTTCTCGAACACAACAGAAACGaa > 3:18838/1‑140 (MQ=255) ttGCACCTTGGGCGGATTAAGGGGGGATTATGGACCTTTTGGGCAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCACCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGCTTCTCGAACACAACAGAAACGaa > 3:13762/1‑140 (MQ=255) gggCGGATTAAGGGGGGATTATGGACCTTTTGGGCAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCACCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGCTTCTCGAACACAACAGAAACGAAGTCGCATTTTCCTACAAc > 5:187233/1‑149 (MQ=255) aCCTTTTGGGCAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCACCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGCTTCTCGAACACAACAGAAACGAAGTCGCATTTTCCTACAACCGACCCAGAAACCTCTGATACGaa > 5:194232/1‑149 (MQ=255) cTTTTGGGCAGGGTTGGGTGGAGATCGAGCGCCGCGCGGGACGCCACCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGCTTCTCGAACACAACAGAAACGAAGTCGCATTTTCCTACAACCGACCCAGAAACctc < 1:45691/138‑1 (MQ=255) cTTTTGGGCAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCACCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGCTTCTCGAACACAACAGAAACGAAGTCGCATTTTCCTACAACCGCCCCAGAAACCTCTGATCCGAATc > 4:243362/1‑149 (MQ=255) cTTTTGGGCAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCACCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGCTTCTCGAACACAACAGAAACGAAGTCGCATTTTCCTACAACCGACCCAGAAACCTCTGATCCGAATc > 2:186908/1‑149 (MQ=255) cTTTTGGGCAGGGTTGGGAGGAGATCGAGCGCCGCGCGGGACGCCACCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGCTTCTCGAACACAACAGAAACGAAGTCGCATTTTCCTACAACCGACCCAGAAACctc > 2:45691/1‑138 (MQ=255) ggCAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCaccctgcccaaaaggtccataatccccccttaatccgcccaaggtgcaataacagccacaccacaccgggagccccaccatgcacgttctgctctgcga < 2:27816‑M2/138‑100 (MQ=255) ggCAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCaccctgcccaaaaggtccataatccccccttaatccgcccaaggtgcaataacagccacaccacaccgggagccccaccatgcacgttctgctctgcga > 1:27816‑M2/1‑39 (MQ=255) cAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCaccctgcccaaaaggtccataatccccccttaatccgcccaaggtgcaataacagccacaccacaccgggagccccaccatgcacgttctgctctgcgaggacgacgac > 3:297998‑M2/1‑37 (MQ=255) cAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCaccctgcccaaaaggtccataatccccccttaatccgcccaaggtgcaataacagccacaccacaccgggagccccaccatgcacgttctgctctgcgaggacgacgac < 4:297998‑M2/146‑110 (MQ=255) ggTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCaccctgcccaaaaggtccataatccccccttaatccgcccaaggtgcaataacagccacaccacaccgggagccccaccatgcacgttctgctctgcgaggacgacgacctgatc < 5:80828‑M2/149‑116 (MQ=255) gggggAGATCGAGCGCCGCGCGGGACGCCACCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGCTTCTCGAACACAACAGAAACGAAGTCGCATTTTCCTACAACCGACCCAGAAACCTCTGATCCGAATCCATGATGGGATTTccc > 4:143100/1‑149 (MQ=255) gccgcGCGGGACGCCACCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGCTTCTCGAACACAACAGAAACGAAGTCGCATTTTCCTACAACCGACCCAGAAACCTCTGATCCGAATCCATGATGGGATTTCCCCCTGCACACGTTGt < 1:186908/149‑1 (MQ=255) ccgcGCGGGACGCCACCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGCTTCTCGAACACAACAGAAACGAAGTCGCATTTTCCTACACCCGACCCAGAACCCTCTGATCCGAATCCATGATGGGATTTCCCCCTGCACACGTTGt > 5:132542/1‑148 (MQ=255) ccgcGCGGGACGCCACCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGCTTCTCGAACACAACAGAAACGAAGTCGCATTTTCCTACAACCGACCCAGAAACCTCTGATCCGAATCCATGATGGGATTTCCCCCTGCACACGTTGt > 1:30059/1‑148 (MQ=255) gggACGCCACCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGCTTCTCGAACACAACAGAAACGAAGTCGCATTTTCCTACCACCGCCCCAGAAACCTCTGATCCGAAACCATGATGCGATTTCCCCCTGCACACGATCTCAGCgag > 8:21720/1‑149 (MQ=37) gCCACCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGCTTCTCGAACACAACAGAAACGAAGTCGCATTTTCCTACAACCGCCCCAGAAACCTCTGATCCGAATCCATGATGGGATTTCCCCCTGCACACGTTGTCAGGGAGacac > 7:123213/1‑148 (MQ=255) | TCGCAGAGCAGAACGTGCATGGTGGGGCTCCCGGTGTGGTGTGGCTGTTATTGCACCTTGGGCGGATTAAGGGGGGATTATGGACCTTTTGGGCAGGGTTGGGGGGAGATCGAGCGCCGCGCGGGACGCCACCCTGCCCCTCGCAGCCTCAACCCCAATTCCCGAGCTTCTCGAACACAACAGAAACGAAGTCGCATTTTCCTACAACCGACCCAGAAACCTCTGATCCGAATCCATGATGGGATTTCCCCCTGCACACGTTGTCAGGGAGACAC > NC_002947/4798643‑4798917 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |