New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4963231 =	53 (0.900)	3 (0.050)	3/244	NT	5.6%	coding (424/1218 nt)	fleS	two‑component system sensor histidine kinase FleS
	?	NC_002947	4963267 =	50 (0.890)					coding (388/1218 nt)	fleS	two‑component system sensor histidine kinase FleS

GAGGCAACCATGCGCCCCAACGACGACAGCCGCTCGTGGCGAGCCAGCTGGTCCTGGAGGCGACGGGTTTCAGTCAGGTCGTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAGGCTCACCGAGCAACTCGCAGGCGGCCGGGTTGGCTTCGCGCACCAGGCCCTGACCATCGATCA  >  NC_002947/4963083‑4963377                                                                                                                                                     |                                                                                                                                                    gAGGCAACCATGCGCCCCAACGACGACAGCCGCTCGTGGCGAGCCAGCTGGTCCTGGAGGCGACGGGTTTCAGTCAGGTCGTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTc                                                                                                                                                     <  7:11346/149‑1 (MQ=255)   gaacctgcttgacttgctgcctggcggggtgatcgtgcgcgatggtcagggcctggtgcgcgaagccaacccggccgcctgcgagttgctcggtgagcctctgatcggccaattgtggcgccaggtgatcgcccgtagctttgccccgc                                                                                                                                                   >  2:58011‑M1/147‑149 (MQ=255)   gaacctgctggacttgctgcctggcggggtgatcgtgatcgatggtcagggcctggtgcgcgaagccaacccggccgcctgcgagttgctcggtgagcctctgatcggccaattgtggcgccaggtgatcgcccgtagctttgccccgc                                                                                                                                                   <  5:240643‑M1/3‑1 (MQ=255)        ccATGCGCCCCAACGACGACAGCCGCTCGTGGCGAGCCAGCTGGTCCTGGAGGCGACGGGTTTCAGTCAGGTCGTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGc                                                                                                                                              <  8:238353/149‑1 (MQ=255)         cATGCGCCCCAACGACGACAGCCGCTCGTGGCGAGCCAGCTGGTCCTGGAGGCGACGGGTTTCAGTCAGGTCGTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGc                                                                                                                                              >  7:237956/1‑148 (MQ=255)             cgcCCCAACGACGACAGCCGCTCGTGGCGAGCCAGCTGGTCCTGGAGGCGACGGGTTTCAGTCAGGTCGTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGAc                                                                                                                                         <  8:237956/149‑1 (MQ=255)               ccccAACGACGACAGCCGCTCGTGGCGAGCCAGCTGGTCCTGGAGGCGACGGGTTTCAGTCAGGTCGTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACtt                                                                                                                                       >  3:118759/1‑149 (MQ=255)                  cAACGACGACAGCCGCTCGTGGCGAGCCAGCTGGTCCTGGAGGCGACGGGTTTCAGTCAGGTCGTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑t                                                                                                                                   <  6:11343/149‑1 (MQ=255)                      gacgacAGCCGCTCGTGGCGAGCCAGCTGGTCCTGGAGGCGACGGGTTTCAGTCAGGTCGTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGcc                                                                                                                               >  8:93017/1‑149 (MQ=255)                       ccgacAGCCGCTCGTGGCGAGCCAGCTGGTCCTGGAGGCGACGGGTTTCCGGCAGGTCGTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCcg                                                                                                                              <  4:119931/148‑1 (MQ=255)                            aGCCGCTCGTGGCGAGCCAGCTGGTCCTGGAGGCGACGGGTTTCAGTCAGGTCGTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCgtcgtc                                                                                                                         >  1:157074/1‑149 (MQ=255)                             gCCGCTCGTGGCGAGCCAGCTGGTCCTGGAGGCGACGGGTTTCAGTCAGGTCGTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTcc                                                                                                                        <  3:254480/149‑1 (MQ=255)                                  tCGTGGCGAGCCAGCTGGTCCTGGAGGCGACGGGTTTCAGTCAGGTCGTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGCTCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTgcg                                                                                                                   >  3:231872/1‑149 (MQ=255)                                     tGGCGAGCCAGCTGGTCCTGGAGGCGACGGGTTTCAGTCAGGTCGTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCgg                                                                                                                <  2:157074/149‑1 (MQ=255)                                      tgatcgatggtcagggcctggtgcgcgaagccaacccggccgcctgcgagttgctcggtgagcctctgatcggccaattgtggcgccaggtgatcgcccgtagctttgcccCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCggg                                                                                                               >  3:334455‑M1/112‑149 (MQ=255)                                       gCGAGCCAGCTGGTCCTGGAGGCGACGGGTTTCAGTCAGGTCGTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCg                                                                                                                                     >  7:124325/1‑127 (MQ=255)                                       gCGAGCCAGCTGGTCCTGGAGGCGACGGGTTTCAGTCAGGTCGTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCg                                                                                                                                     <  8:124325/127‑1 (MQ=255)                                       gCGAGCCAGCTGGTCCTGGAGGCGACGGGTTTCAGTCAGGTCGTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCggg                                                                                                               <  7:93017/148‑1 (MQ=255)                                           gCCAGCTGGTCCTGGAGGCGACGGGTTTCAGTCAGGTCGTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCaaa                                                                                                          <  2:304544/149‑1 (MQ=255)                                                 tGGTCCTGGAGGCGACGGGTTTCAGTCAGGTCGTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACg                                                                                                    <  4:118759/149‑1 (MQ=255)                                                            gCGACGGGTTTCAGTCAGGTCGTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCt                                                                                         >  2:280177/1‑149 (MQ=255)                                                              gACGGGTTTCAGTCAGGTCGTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTgg                                                                                       >  3:196868/1‑149 (MQ=255)                                                                   gTTTCAGTCAGGTCGTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCGCTGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGcc                                                                                   <  1:280177/149‑1 (MQ=255)                                                                   gTTTCAGTCAGGTCGTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCca                                                                                  >  3:198409/1‑149 (MQ=255)                                                                    tttCAGTCAGGTCGTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCca                                                                                  >  7:152769/1‑148 (MQ=255)                                                                        cccggccgcctgcgagttgctcggtgagcctctgatcggccaattgtggcgccaggtgatcgcccgtagctttgcccCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCaaa                                                                                                          <  4:323150‑M1/43‑1 (MQ=255)                                                                        cccggccgcctgcgagttgctcggtgagcctctgatcggccaattgtggcgccaggtgatcgcccgtagctttgcccCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCaaa                                                                                                          >  3:323150‑M1/78‑120 (MQ=255)                                                                            agGTCGTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTGG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGcc                                                                         >  8:318009/1‑149 (MQ=255)                                                                              gTCGTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACt                                                                                                                                        <  2:57280/85‑1 (MQ=255)                                                                              gTCGTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACt                                                                                                                                        >  1:57280/1‑85 (MQ=255)                                                                              gTCGTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGa                                                                       >  2:324560/1‑149 (MQ=255)                                                                                cGTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGAt                                                                      >  1:179298/1‑148 (MQ=255)                                                                                 gTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGAt                                                                      >  4:332860/1‑147 (MQ=255)                                                                                 gTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGAt                                                                      >  1:21593/1‑147 (MQ=255)                                                                                 gTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGAt                                                                      >  6:55668/1‑147 (MQ=255)                                                                                    gAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCaga                                                                  <  4:231872/148‑1 (MQ=255)                                                                                      gcagcaCCAATTGGCCAGGCTCTGAATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTAAGGGCGATCACATGGCGCAACAATTgga                                                                          >  7:56441/1‑137 (MQ=255)                                                                                      gcagcaCCAATTGGCCAGGCTCGGCATCCAGTGTGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGTCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGTGATCACCTGGCGTCACAATTGGc                                                                          <  8:56441/138‑1 (MQ=255)                                                                                        agcaCCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAGGCt                                                              >  6:317866/1‑148 (MQ=255)                                                                                         gcaCCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAGGCTCa                                                            >  6:2045/1‑149 (MQ=255)                                                                                          caCCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGATACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAAtt                                                                             <  5:267264/131‑1 (MQ=255)                                                                                          caCCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAGGCTCAc                                                           >  3:201439/1‑149 (MQ=255)                                                                                          caCCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCAACAAtt                                                                             >  6:267264/1‑131 (MQ=255)                                                                                              aaTTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAGGCTCACCGAg                                                       <  1:324560/149‑1 (MQ=255)                                                                                                      aGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAgg                                                                >  5:44595/1‑132 (MQ=255)                                                                                                      aGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAgg                                                                <  6:44595/132‑1 (MQ=255)                                                                                                       ggCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAGGCTCACCGAGCAACTcaca                                              <  5:317866/149‑1 (MQ=255)                                                                                                         cTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAGGCTCACCGAGCAACTCGCAgg                                            <  5:2045/149‑1 (MQ=255)                                                                                                          tCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAGGCTCACCGAGCAACTCGCAggc                                           >  6:18215/1‑149 (MQ=255)                                                                                                              cATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAGGCTCACCGAGCAACTCGCAGGCGGcc                                       >  5:246336/1‑149 (MQ=255)                                                                                                                     tGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAGGCTCACCGAGCAACTCGCAGGCGGCCGGGTTgg                                <  7:318009/149‑1 (MQ=255)                                                                                                                       aGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAGGCTCACCGAGCAACTCGCAGGCGGCCGGGTTGGc                               <  5:55668/148‑1 (MQ=255)                                                                                                                            gTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAGGCTCACCGAGCAACTCGCAGGCGGCCGGGTTGGCTTcgcg                         >  8:145012/1‑149 (MQ=255)                                                                                                                               gCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAGGCTCACCGAGCAACTCGCAGGCGGCCGGGTTGGCTTCGCGCAc                      <  4:196868/149‑1 (MQ=255)                                                                                                                               gCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAGGCTCACCGAGCAACTCGCAGGCGGCCGGGTTGGCTTCGCGCAc                      <  2:179298/149‑1 (MQ=255)                                                                                                                                     gACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAGGCTCACCGAGCAACTCGCAGGCGGCCGGGTTGGCTTCGCGCACCAGGcc                <  3:50832/149‑1 (MQ=255)                                                                                                                                        aGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAGGCTCACCGAGCAACTCGCAGGCGGCCGGGTTGGCTTCGCGCACCAGGCCCt              >  3:99335/1‑148 (MQ=255)                                                                                                                                             gcgACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAGGCTCAcc                                                          <  7:71341/99‑1 (MQ=255)                                                                                                                                             gcgACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAGGCTCAcc                                                          >  8:71341/1‑99 (MQ=255)                                                                                                                                                 ccGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAGGCTCACCGAGCAACTCGCAGGCGGCCGGGTTGGCTTCGCGCACCAGGCCCTGACCATcgat    >  2:45398/1‑149 (MQ=255)                                                                                                                                                  cGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAGGCTCACCGAGCAACTCGCAGGCGGCCGGGTTGGCTTCGCGCACCAGGCCCTGACCATcgat    >  3:78722/1‑148 (MQ=255)                                                                                                                                                   gTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAGGCTCACCGAGCAACTCGCAGGCGGCCGGGTTGGCTTCGCGCACCAGGCCCTGACCATcgatca  <  4:198409/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GAGGCAACCATGCGCCCCAACGACGACAGCCGCTCGTGGCGAGCCAGCTGGTCCTGGAGGCGACGGGTTTCAGTCAGGTCGTTGAGCAGCACCAATTGGCCAGGCTCGGCATCCAGTGAGCGGGTGGCGATCGACAGGCGGCGACCGTCGCGCAGCGAGACTTCG‑TGGCCGTCGTCCTTGCGCGGGGCAAAGCTACGGGCGATCACCTGGCGCCACAATTGGCCGATCAGAGGCTCACCGAGCAACTCGCAGGCGGCCGGGTTGGCTTCGCGCACCAGGCCCTGACCATCGATCA  >  NC_002947/4963083‑4963377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.