New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5055940 =	46 (0.780)	4 (0.070)	4/244	NT	9.3%	coding (387/942 nt)	gsiC	glutathione ABC transporter permease
	?	NC_002947	5055976 =	34 (0.600)					coding (351/942 nt)	gsiC	glutathione ABC transporter permease

TGGAGTTGGGAGAGGAAACCTCCGTCGACCAAGCTTCCGATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTGCAGCACAGTTC  >  NC_002947/5055794‑5056073                                                                                                                                                   |                                                                                                                                       tcggcgacatgctctcagggaatttcggggtctcaatgaccagcggcagaactgtgctgcaggaggtatccctggttctaccgtggacgctgcaattgacgtttgcatccgcgttgatcggcatcgtgttccgtctgccccttggtGTc                                                                                                                                      <  1:76737‑M1/3‑1 (MQ=255)  ggAGTTGGGAGAGGAAACCTCCGTCGACCAAGCTTCCGATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCCTCAACATGGCCGACAAGACCCCGGGGAACGACAACCCAGTCAGCTACAGAATGCGGCCCACGTAgacg                                                                                                                                     >  6:360746/1‑146 (MQ=255)  cggcgacatgctctcagggaatttcggggtctcaatgaccagaggcagaactgtcctgcaggaggtatcactggttctaccgtggacgctgcaattgacgtttgcatccgtgttgatcggcctcgtgttcggtctgccccttggtGTCt                                                                                                                                     <  4:349500‑M1/4‑1 (MQ=255)   gAGTTGGGAGAGGAAACCTCCGTCGACCAAGCTTCCGATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑g                                                                                                                                   <  6:46232/149‑1 (MQ=255)   gAGTTGGGAGAGGAAACCTCCGTCGACCAAGCTTCCGATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑g                                                                                                                                   <  5:338736/149‑1 (MQ=255)    gcgacatgctctcagggaatttcggtgtctcaatgaccagcggcagaactgtgctgcaggaggtatccctggttctaccgtggacgctgcaattgacgtttgcatccgtgttgatcggcctcgtgttcggtctgccccttggtGTCT‑gg                                                                                                                                  >  1:375486‑M1/144‑149 (MQ=255)    aGTTGCGAGAGGAAACCTCAGTCGACAAAGCTTCCGATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGCAGCATCAACATGGCAGACACGAACGAGGCGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCtcg                                                                                                                                   >  8:37737/1‑147 (MQ=255)      ttGGGAGAGGAAACCTCCGTCGAGCAAGCTTACGTCCAAGGGGAACCACCGGAAATGGATGGCGAAATCCAGGAGCATCAACATGGCAGACACGATCGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGc                                                                                                                                 <  5:360746/148‑1 (MQ=255)        gggATAGGAAACCTCCGTCGACCAAGCTTCCTATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAg                                                                                                                              <  4:96266/149‑1 (MQ=255)         ggAGAGGAAACCTCCGTCGACCAACCTTCCGATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGACCGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAgg                                                                                                                             >  5:14516/1‑149 (MQ=255)         ggAGACGAAACCTCCGTCGACCAAGCTTCCGATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAg                                                                                                                              <  6:175677/148‑1 (MQ=255)          gagaGGAAACCTCCGTCGACCAAGCTTCCGATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGc                                                                                                                            >  7:303605/1‑149 (MQ=255)          gagaGGAAACCTCCGTCGACCAAGCTTCCGATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGc                                                                                                                            <  4:168758/149‑1 (MQ=255)               gAAACCTCCGTCGACCAAGCTTCCGATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCt                                                                                                                                     <  7:301389/136‑1 (MQ=255)               gAAACCTCCGTCGACCAAGCTTCCGATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCt                                                                                                                                     >  8:301389/1‑136 (MQ=255)               gAAACCTCCGTCGACCAAGCTTCCGATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGc                                                                                                                       >  2:112654/1‑149 (MQ=255)                 aaCCTCCGTCGACCAAGCTTCCGATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGcga                                                                                                                     <  5:144851/149‑1 (MQ=255)                       cGTCGACCAAGCTTCCGATCACGGGGAACCACCGTAAATGGATGGCGAAAACCAGGAGCATCAACATGTCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGaa                                                                                                                 <  6:84989/147‑1 (MQ=255)                         tcggggtctcaatgaccagcggcagaactgtgctgcaggaggtatccctggttctgccgtggacgctgcaattgacgtttgcatccgtgttgatcggcctcgtgttcggtctgccccttggtGTCT‑GGCCAGGCGTTGCGACGAAgcgc                                                                                                             <  3:306899‑M1/27‑1 (MQ=255)                             ccAAGCTTCCGATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCgccgcc                                                                                                         <  8:303605/149‑1 (MQ=255)                              cAAGCTTCCGATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCAT‑‑‑CATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGa                                                                                                     <  7:231989/149‑1 (MQ=255)                                 gCTTCCGATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGa                                                                                                     <  4:318703/149‑1 (MQ=255)                                   aatgaccagcggcagaactgtgctgcaggaggtatccctggttctgccgtggacgctgcaattgacgtttgcatccgtgttgatcggcctcgtgttcggtctgccccttggtGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGac                                                                                                    >  4:306899‑M1/113‑148 (MQ=255)                                       gATCACGGGGAACCACCGGAAATGGATGGCGAAAACAAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGCCGTTGCGACGAACCGCCGACCAGACAcc                                                                                                 >  3:56252/1‑147 (MQ=255)                                           aCGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGCCACGAACGCGGGGAACGACACCCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAggg                                                                                            <  5:97076/148‑1 (MQ=255)                                           aCGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAggg                                                                                            <  7:355294/148‑1 (MQ=255)                                             ggggAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCa                                                                                         <  5:328998/149‑1 (MQ=255)                                             ggggAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCa                                                                                         >  3:266148/1‑149 (MQ=255)                                                    caccTGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCATTGCGACGAAGCGCCGCCCAGACACCAAGGGGCa                                                                                         <  8:146222/142‑1 (MQ=255)                                                    caccGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCATTGCGACGAAGCGCCGCCCAGACACCAAGGGGCa                                                                                         >  7:146222/1‑142 (MQ=255)                                                      ccGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGacac                                                                                                  >  2:311320/1‑131 (MQ=255)                                                      ccGGAAATGGATGGCGAAAACCAGGAGCATCAACAAGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGacac                                                                                                  <  1:311320/131‑1 (MQ=255)                                                       cGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAacac                                                                               <  4:266148/149‑1 (MQ=255)                                                             tggatggCGAAAACCAGGTGCATCATCATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGATTGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCTGACACCAAGGGGCAGACGGAACACGAGGcc                                                                         <  6:14516/149‑1 (MQ=255)                                                              ggatggCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGcc                                                                         >  6:372342/1‑148 (MQ=255)                                                               gatggGGTAAACCAGGAGCATCAACATGGCAGACTCGAACGGGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCGAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGa                                                                       <  4:56252/149‑1 (MQ=255)                                                                   gCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTAGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATc                                                                     <  1:112654/148‑1 (MQ=255)                                                                    atccctggttctaccgtggacgctgcaattgacgtttgcatccgtgttgatcggcctcgtgttcggtctgccccttggtGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCa                                                                                                       <  5:98466‑M1/33‑1 (MQ=255)                                                                    atccctggttctaccgtggacgctgcaattgacgtttgcatccgtgttgatcggcctcgtgttcggtctgccccttggtGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCa                                                                                                       >  6:98466‑M1/80‑112 (MQ=255)                                                                     gAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAaca                                                                 >  2:36529/1‑149 (MQ=255)                                                                            aGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATg                                                           >  3:299013/1‑148 (MQ=255)                                                                            aGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCCAACACGAGGCCGATCAACACGGATGc                                                          <  7:37737/149‑1 (MQ=255)                                                                            aGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCACCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATg                                                           >  3:277214/1‑148 (MQ=255)                                                                                  aTCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCACCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGt                                                    <  4:277214/149‑1 (MQ=255)                                                                                      aCATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAAt                                                >  3:76149/1‑149 (MQ=255)                                                                                         tGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTg                                              >  5:149537/1‑148 (MQ=255)                                                                                               acacGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTc                                       >  6:271151/1‑149 (MQ=255)                                                                                                   gAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACg                                   >  6:206217/1‑149 (MQ=255)                                                                                                           ggAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGAt                                                                      <  5:322463/106‑1 (MQ=255)                                                                                                           ggAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGAt                                                                      >  6:322463/1‑106 (MQ=255)                                                                                                               cGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGGGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGAt                                                                      <  1:98337/102‑1 (MQ=255)                                                                                                               cGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGAt                                                                      >  2:98337/1‑102 (MQ=255)                                                                                                                gACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGt                                                    >  2:166069/1‑119 (MQ=255)                                                                                                                gACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGt                                                    <  1:166069/119‑1 (MQ=255)                                                                                                                   aaCCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATAc                   <  4:299013/149‑1 (MQ=255)                                                                                                                             gCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGAt                                                                      >  6:259907/1‑88 (MQ=255)                                                                                                                             gCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGAt                                                                      <  5:259907/88‑1 (MQ=255)                                                                                                                                    aaTGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTGCAGCACAGTTc  >  3:349500/1‑149 (MQ=255)                                                                                                                                     aTGCGGCCCAGGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGCGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGc                                          <  3:161659/108‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                       TGGAGTTGGGAGAGGAAACCTCCGTCGACCAAGCTTCCGATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTGCAGCACAGTTC  >  NC_002947/5055794‑5056073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.