New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5055940 =	46 (0.780)	4 (0.070)	4/244	NT	9.3%	coding (387/942 nt)	gsiC	glutathione ABC transporter permease
	?	NC_002947	5055976 =	34 (0.600)					coding (351/942 nt)	gsiC	glutathione ABC transporter permease

GATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTGCAGCACAGTTCTGCCGCTGGTCATTGAGACCCCGAAATTCCCTGAGAGCATGTCGCCGA  >  NC_002947/5055832‑5056121                                                                                                                                                  |                                                                                                                                                  gATCACGGGGAACCACCGGAAATGGATGGCGAAAACAAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGCCGTTGCGACGAACCGCCGACCAGACAcc                                                                                                                                                 >  3:56252/1‑147 (MQ=255)     aCGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGCCACGAACGCGGGGAACGACACCCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAggg                                                                                                                                            <  5:97076/148‑1 (MQ=255)     aCGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAggg                                                                                                                                            <  7:355294/148‑1 (MQ=255)       ggggAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCa                                                                                                                                         <  5:328998/149‑1 (MQ=255)       ggggAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCa                                                                                                                                         >  3:266148/1‑149 (MQ=255)              caccTGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCATTGCGACGAAGCGCCGCCCAGACACCAAGGGGCa                                                                                                                                         <  8:146222/142‑1 (MQ=255)              caccGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCATTGCGACGAAGCGCCGCCCAGACACCAAGGGGCa                                                                                                                                         >  7:146222/1‑142 (MQ=255)                ccGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGacac                                                                                                                                                  >  2:311320/1‑131 (MQ=255)                ccGGAAATGGATGGCGAAAACCAGGAGCATCAACAAGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGacac                                                                                                                                                  <  1:311320/131‑1 (MQ=255)                 cGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAacac                                                                                                                               <  4:266148/149‑1 (MQ=255)                       tggatggCGAAAACCAGGTGCATCATCATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGATTGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCTGACACCAAGGGGCAGACGGAACACGAGGcc                                                                                                                         <  6:14516/149‑1 (MQ=255)                        ggatggCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGcc                                                                                                                         >  6:372342/1‑148 (MQ=255)                         gatggGGTAAACCAGGAGCATCAACATGGCAGACTCGAACGGGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCGAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGa                                                                                                                       <  4:56252/149‑1 (MQ=255)                             gCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTAGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATc                                                                                                                     <  1:112654/148‑1 (MQ=255)                               gAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAaca                                                                                                                 >  2:36529/1‑149 (MQ=255)                                      aGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATg                                                                                                           >  3:299013/1‑148 (MQ=255)                                      aGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCCAACACGAGGCCGATCAACACGGATGc                                                                                                          <  7:37737/149‑1 (MQ=255)                                      aGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCACCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATg                                                                                                           >  3:277214/1‑148 (MQ=255)                                            aTCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCACCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGt                                                                                                    <  4:277214/149‑1 (MQ=255)                                                aCATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAAt                                                                                                >  3:76149/1‑149 (MQ=255)                                                   tGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTg                                                                                              >  5:149537/1‑148 (MQ=255)                                                         acacGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTc                                                                                       >  6:271151/1‑149 (MQ=255)                                                             gAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACg                                                                                   >  6:206217/1‑149 (MQ=255)                                                                     ggAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGAt                                                                                                                      >  6:322463/1‑106 (MQ=255)                                                                     ggAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGAt                                                                                                                      <  5:322463/106‑1 (MQ=255)                                                                         cGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGGGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGAt                                                                                                                      <  1:98337/102‑1 (MQ=255)                                                                         cGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGAt                                                                                                                      >  2:98337/1‑102 (MQ=255)                                                                          gACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGt                                                                                                    <  1:166069/119‑1 (MQ=255)                                                                          gACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGt                                                                                                    >  2:166069/1‑119 (MQ=255)                                                                             aaCCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATAc                                                                   <  4:299013/149‑1 (MQ=255)                                                                                       gCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGAt                                                                                                                      <  5:259907/88‑1 (MQ=255)                                                                                       gCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGAt                                                                                                                      >  6:259907/1‑88 (MQ=255)                                                                                              aaTGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTGCAGCACAGTTc                                                  >  3:349500/1‑149 (MQ=255)                                                                                               aTGCGGCCCAGGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGCGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGc                                                                                          <  3:161659/108‑1 (MQ=255)                                                                                                              gtctgggcggcgcttcgtcgcaacgcctggccagacACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGCAGAACCAGGGATACCTCCTGCAGCACAGTTCTGCCGCTGGTCAtt                                    >  4:306899‑M2/37‑148 (MQ=255)                                                                                                              TCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTGCAGCACAGTTCTGCCGCTGGTCATTga                                  >  5:271151‑M1/1‑149 (MQ=255)                                                                                                                 tgggcggcgcttcgtcgcaacgcctggccagacACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGAt                                                                     >  6:98466‑M2/34‑112 (MQ=255)                                                                                                                 tgggcggcgcttcgtcgcaacgcctggccagacACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGAt                                                                     <  5:98466‑M2/79‑1 (MQ=255)                                                                                                                   GCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTGCAGCACAGTTCTGCCGCTGGTCATTgag                                 >  1:36529‑M1/1‑146 (MQ=255)                                                                                                                       gcgcttcgtcgcaacgcctggccagacACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGCAGAACCAGGGATACCTCCTGCAGCACAGTTCTGCCGCTGGTCATTGAGACCCCGa                          <  3:306899‑M2/122‑1 (MQ=255)                                                                                                                             gCGACGAAGCGCCGCCCATACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTGCAGCACAGTTCTGCCGCTGGTCATTGAGACCCCGAAATTc                     <  5:372342/148‑1 (MQ=255)                                                                                                                              cgacgaAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTGCAGCACAGTTCTGCCGCTGGTCATTGAGACCCCGAAATTccc                   <  6:149537/149‑1 (MQ=255)                                                                                                                                     gcgcCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTGCAGCACAGTTCTGCCGCTGGTCATTGAGACCCCGAAATTCCCTGagag             >  8:99220/1‑148 (MQ=255)                                                                                                                                       gccgccCAGACACCAACGGGCATACGGAACACGAGGCCGATCAACACGGATGCAAACTTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTGCAGCACAGTTCTGCCGCTGGTCATTGAGACCCCGAAATTCCCTGAGAGCAt          <  4:76149/149‑1 (MQ=255)                                                                                                                                         cgccCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTGCAGCACAGTTCTGCCGCTGGTCATTGAGACCCCGAAATTCCCTGAGAGCATGt        >  3:82788/1‑149 (MQ=255)                                                                                                                                         cgccCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTGCAGCACAGTTCTGCCGCTGGTCATTGAGACCCCGAAATTCCCTGAGAGCATGt        >  1:172185/1‑149 (MQ=255)                                                                                                                                           cccAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGAt                                                                                                            >  6:166069/1‑47 (MQ=255)                                                                                                                                           cccAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGAt                                                                                                            <  5:166069/47‑1 (MQ=255)                                                                                                                                            ccagacACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTGCAGCACAGTTCTGCCGCTGGTCATTGAGACACCGAAATTCCCTGAGAGCATGTCGc     >  1:375486‑M2/7‑149 (MQ=255)                                                                                                                                              agacACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGTGATACCTCCTGCAGGACAGTTCTGCCTCTGGTCATTGAGACCCCGAAATTCCCTGAGAGCATGTCGCCg   <  4:349500‑M2/145‑1 (MQ=255)                                                                                                                                               gacACCAAGGGGCAGACGGAACACGATGCCGATCAACGCGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTGCAGCACAGTTCTGCCGCTGGTCATTGAGACCCCGAAATTCCCTGAGAGCATGTCGCCGa  <  1:76737‑M2/146‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                  GATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCT‑GGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTGCAGCACAGTTCTGCCGCTGGTCATTGAGACCCCGAAATTCCCTGAGAGCATGTCGCCGA  >  NC_002947/5055832‑5056121

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.